CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 222

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	222	D222D	D6147D	syn	gaC	gaT	1708	1708	1	18703-18705
ORF1ab/nsp14A2-B	222	D222Y	D6147Y	nonsyn	Gac	Tac	717	716	0.998605	18703-18705
ORF1ab/nsp14A2-B	222	D222Y	D6147Y	nonsyn	GaC	TaT	717	1	0.0013947	18703-18705
ORF1ab/nsp14A2-B	222	D222N	D6147N	nonsyn	Gac	Aac	151	151	1	18703-18705
ORF1ab/nsp14A2-B	222	D222del	D6147del	del	GAC	---	127	127	1	18703-18705
ORF1ab/nsp14A2-B	222	D222G	D6147G	nonsyn	gAc	gGc	59	59	1	18703-18705
ORF1ab/nsp14A2-B	222	D222V	D6147V	nonsyn	gAc	gTc	54	53	0.981481	18703-18705
ORF1ab/nsp14A2-B	222	D222V	D6147V	nonsyn	gAC	gTA	54	1	0.0185185	18703-18705
ORF1ab/nsp14A2-B	222	D222A	D6147A	nonsyn	gAc	gCc	29	28	0.965517	18703-18705
ORF1ab/nsp14A2-B	222	D222A	D6147A	nonsyn	gAC	gCA	29	1	0.0344828	18703-18705
ORF1ab/nsp14A2-B	222	D222E	D6147E	nonsyn	gaC	gaA	21	15	0.714286	18703-18705
ORF1ab/nsp14A2-B	222	D222E	D6147E	nonsyn	gaC	gaG	21	6	0.285714	18703-18705
ORF1ab/nsp14A2-B	222	D222H	D6147H	nonsyn	Gac	Cac	6	6	1	18703-18705
ORF1ab/nsp14A2-B	222	D222del2	D6147del2	del	gAC	g--	3	3	1	18703-18705
ORF1ab/nsp14A2-B	222	D222L	D6147L	nonsyn	GAC	CTT	3	2	0.666667	18703-18705
ORF1ab/nsp14A2-B	222	D222L	D6147L	nonsyn	GAC	TTG	3	1	0.333333	18703-18705
ORF1ab/nsp14A2-B	222	D222P	D6147P	nonsyn	GAC	CCA	2	2	1	18703-18705
ORF1ab/nsp14A2-B	222	D222K	D6147K	nonsyn	GaC	AaG	2	2	1	18703-18705
ORF1ab/nsp14A2-B	222	D222S	D6147S	nonsyn	GAC	TCT	1	1	1	18703-18705
ORF1ab/nsp14A2-B	222	D222del1	D6147del1	del	gaC	ga-	1	1	1	18703-18705

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1708	1708	All	0.000327
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	847	847	B.1.1.7	0.000758
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	716	717	All	0.000137
ORF1ab/nsp14A2-B	222	D222Y	GaC	TaT	1	717	All	0
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	237	237	AY.25	0.001426
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	151	151	All	0.000029
ORF1ab/nsp14A2-B	222	D222del	GAC	---	127	127	All	0.000024
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	109	109	B.1.1.7	0.000098
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	69	69	AY.4	0.000107
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	69	69	B.1.617.2	0.00026
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	68	68	AY.103	0.000422
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	64	64	AY.43	0.000284
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	59	59	All	0.000011
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	58	58	AY.4	0.00009
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	55	55	AY.75	0.003081
ORF1ab/nsp14A2-B	222	D222V	gAc	gTc	53	54	All	0.00001
ORF1ab/nsp14A2-B	222	D222V	gAC	gTA	1	54	All	0
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	54	54	AY.6	0.002221
ORF1ab/nsp14A2-B	222	D222del	GAC	---	53	53	B.1.1.7	0.000047
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	46	46	AY.70	0.009591
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	45	45	AY.5	0.000929
ORF1ab/nsp14A2-B	222	D222V	gAc	gTc	44	44	B.1.177.33	0.072368
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	40	40	AY.4	0.000062
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	35	35	B.1.1.7	0.000031
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	35	35	D.2	0.002626
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	32	32	B.1.617.2	0.00012
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	28	29	All	0.000005
ORF1ab/nsp14A2-B	222	D222A	gAC	gCA	1	29	All	0
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	27	27	B.1.1.7	0.000024
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	24	24	B.1.2	0.000211
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	22	22	AY.44	0.000134
ORF1ab/nsp14A2-B	222	D222E	gaC	gaA	15	21	All	0.000003
ORF1ab/nsp14A2-B	222	D222E	gaC	gaG	6	21	All	0.000001
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	21	21	AY.103	0.00013
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	21	21	B.1.1	0.000381
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	18	18	B.1.575	0.005461
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	17	17	P.1	0.000268
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	15	15	B.1	0.000137
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	15	15	B.1.2	0.000132
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	14	14	AY.25	0.000084
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	14	14	B.1.1.242	0.608696
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	14	14	B.1.2	0.000123
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	12	12	AY.44	0.000073
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	12	12	C.37	0.001393
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	11	11	AY.43	0.000049
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	10	10	AY.25	0.00006
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	10	10	AY.3	0.000099
ORF1ab/nsp14A2-B	222	D222del	GAC	---	9	9	AY.25	0.000054
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	9	9	AY.74	0.001041
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	9	9	B.1.1	0.000163
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	9	9	B.1.1.348	0.007166
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	9	9	B.1.617.2	0.000034
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	8	8	AY.102	0.000212
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	8	8	B.1.1.192	0.018476
ORF1ab/nsp14A2-B	222	D222E	gaC	gaA	8	8	B.1.577	0.005498
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	8	8	P.1.15	0.001859
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	7	7	AY.3	0.00007
ORF1ab/nsp14A2-B	222	D222del	GAC	---	7	7	AY.4	0.000011
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	7	7	B.1.160	0.000218
ORF1ab/nsp14A2-B	222	D222del	GAC	---	7	7	B.1.177	0.000092
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	7	7	B.1.351.2	0.002118
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	7	7	B.1.526	0.000165
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	6	6	All	0.000001
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	6	6	AV.1	0.030303
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	6	6	AY.100	0.000276
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	6	6	AY.26	0.00017
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	6	6	AY.33	0.000401
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	6	6	AY.47	0.000187
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	6	6	B.1.177	0.000079
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	6	6	B.1.617.2	0.000023
ORF1ab/nsp14A2-B	222	D222del	GAC	---	6	6	B.1.617.2	0.000023
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	6	6	P.1	0.000095
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	AY.120	0.000186
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	AY.13	0.000805
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	AY.29	0.000079
ORF1ab/nsp14A2-B	222	D222del	GAC	---	5	5	AY.43	0.000022
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	AY.54	0.000477
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	AY.98.1	0.000242
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	B.1	0.000046
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	5	5	B.1.1.157	0.004566
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	5	5	B.1.1.306	0.002192
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	5	5	B.1.177.4	0.001055
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	5	5	B.1.222	0.00846
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	5	5	B.1.36.8	0.005
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	5	5	B.1.366	0.02439
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	5	5	B.1.471	0.013661
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	4	4	A.2.5.3	0.041237
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	4	4	AY.120	0.000149
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	4	4	AY.39	0.000099
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	4	4	AY.42	0.000161
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	4	4	AY.44	0.000024
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	4	4	AY.71	0.0019
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	4	4	AY.91	0.002922
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	4	4	AY.99.2	0.000369
ORF1ab/nsp14A2-B	222	D222del	GAC	---	4	4	B.1.1	0.000073
ORF1ab/nsp14A2-B	222	D222V	gAc	gTc	4	4	B.1.1	0.000073
ORF1ab/nsp14A2-B	222	D222E	gaC	gaA	4	4	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	222	D222V	gAc	gTc	4	4	B.1.177	0.000053
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	4	4	B.1.177	0.000053
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	4	4	B.1.177.87	0.002911
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	4	4	B.1.258.17	0.000416
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	4	4	B.1.351.5	0.002398
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	4	4	B.1.497	0.001259
ORF1ab/nsp14A2-B	222	D222del2	gAC	g--	3	3	All	0.000001
ORF1ab/nsp14A2-B	222	D222L	GAC	CTT	2	3	All	0
ORF1ab/nsp14A2-B	222	D222L	GAC	TTG	1	3	All	0
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	AY.100	0.000138
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	AY.114	0.000693
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	AY.16	0.001139
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	AY.4.4	0.001227
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	AY.47	0.000093
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	3	3	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	B.1.177.63	0.008108
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.177.7	0.000495
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	B.1.258	0.0002
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.258	0.0002
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	B.1.351	0.000089
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.36	0.000438
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	B.1.427	0.000151
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	3	3	B.1.429	0.000071
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.516	0.005871
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.526	0.000071
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	B.1.621.1	0.001517
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	3	3	L.3	0.010638
ORF1ab/nsp14A2-B	222	D222del	GAC	---	2	2		0.111111
ORF1ab/nsp14A2-B	222	D222L	GAC	CTT	2	2		0.111111
ORF1ab/nsp14A2-B	222	D222P	GAC	CCA	2	2		0.111111
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	A.2.5	0.000998
ORF1ab/nsp14A2-B	222	D222K	GaC	AaG	2	2	All	0
ORF1ab/nsp14A2-B	222	D222P	GAC	CCA	2	2	All	0
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.116	0.000574
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.118	0.000125
ORF1ab/nsp14A2-B	222	D222E	gaC	gaA	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	AY.46	0.000208
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	AY.46.6	0.000144
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.59	0.001059
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.7.1	0.000225
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.9	0.000135
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	222	D222del	GAC	---	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.1.189	0.003026
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.1.214	0.000111
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.1.222	0.000408
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.1.25	0.001137
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.1.285	0.013072
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.1.317	0.000823
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	222	D222del	GAC	---	2	2	B.1.177.69	0.002967
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.177.81	0.000379
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	2	2	B.1.184	0.117647
ORF1ab/nsp14A2-B	222	D222del2	gAC	g--	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	2	2	B.1.206	0.001631
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.206	0.001631
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	2	2	B.1.258	0.000133
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	2	2	B.1.329	0.001215
ORF1ab/nsp14A2-B	222	D222E	gaC	gaG	2	2	B.1.351.3	0.001753
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.36	0.000292
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.361	0.002577
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.362.2	0.009434
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.427	0.000101
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.456	0.006536
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.525	0.000226
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.535	0.057143
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.561	0.000794
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	2	2	B.1.596	0.000174
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	2	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	222	D222Y	GaC	TaT	1	2	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	2	2	B.1.620	0.001892
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.621	0.000177
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	B.1.637	0.000146
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	P.1.14	0.000096
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	2	2	P.1.7	0.000639
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	222	D222del1	gaC	ga-	1	1	All	0
ORF1ab/nsp14A2-B	222	D222S	GAC	TCT	1	1	All	0
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	1	1	AY.11	0.001339
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.20	0.000039
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.27	0.000065
ORF1ab/nsp14A2-B	222	D222V	gAC	gTA	1	1	AY.3	0.00001
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.32	0.000532
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	222	D222A	gAC	gCA	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	222	D222L	GAC	TTG	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	222	D222V	gAc	gTc	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	222	D222K	GaC	AaG	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.60	0.000938
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.61	0.000105
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	222	D222E	gaC	gaG	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.81	0.001992
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	AY.9.2.1	0.001976
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.1.137	0.0125
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.1.286	0.002899
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	B.1.1.329	0.003846
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.1.382	0.035714
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.1.51	0.001718
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	222	D222del2	gAC	g--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.111	0.001175
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.160.17	0.001701
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.177.11	0.001698
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.177.57	0.000281
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.177.6	0.000977
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.177.79	0.002342
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp14A2-B	222	D222E	gaC	gaA	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	B.1.221.4	0.004167
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.239	0.001221
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.242	0.018868
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	222	D222E	gaC	gaG	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.36.17	0.000494
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.36.36	0.000602
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.36.9	0.003215
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.377	0.004566
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.415	0.014286
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.453	0.003236
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.480	0.002488
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.540	0.009709
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.574	0.002151
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.589	0.007576
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	222	D222E	gaC	gaG	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	222	D222E	gaC	gaG	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	222	D222K	GaC	AaG	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	222	D222S	GAC	TCT	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	C.17	0.055556
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	222	D222del1	gaC	ga-	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	C.37	0.000116
ORF1ab/nsp14A2-B	222	D222H	Gac	Cac	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	D.3	0.005917
ORF1ab/nsp14A2-B	222	D222G	gAc	gGc	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	P.1.2	0.001156
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	P.1.4	0.000977
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	P.1.7	0.000319
ORF1ab/nsp14A2-B	222	D222N	Gac	Aac	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	222	D222A	gAc	gCc	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	Q.2	0.000613
ORF1ab/nsp14A2-B	222	D222del	GAC	---	1	1	Q.2	0.000613
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	Q.3	0.000145
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	Q.3	0.000145
ORF1ab/nsp14A2-B	222	D222Y	Gac	Tac	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	222	D222D	gaC	gaT	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.