CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 22

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	22	Q22H	Q5947H	nonsyn	caG	caT	2790	2466	0.883871	18103-18105
ORF1ab/nsp14A2-B	22	Q22H	Q5947H	nonsyn	caG	caC	2790	324	0.116129	18103-18105
ORF1ab/nsp14A2-B	22	Q22Q	Q5947Q	syn	caG	caA	516	516	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22L	Q5947L	nonsyn	cAg	cTg	88	87	0.988636	18103-18105
ORF1ab/nsp14A2-B	22	Q22L	Q5947L	nonsyn	cAG	cTT	88	1	0.0113636	18103-18105
ORF1ab/nsp14A2-B	22	Q22X	Q5947X	nonsyn	Cag	Tag	26	26	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22del	Q5947del	del	CAG	---	24	24	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22P	Q5947P	nonsyn	cAg	cCg	6	6	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22R	Q5947R	nonsyn	cAG	cGA	6	3	0.5	18103-18105
ORF1ab/nsp14A2-B	22	Q22R	Q5947R	nonsyn	cAg	cGg	6	3	0.5	18103-18105
ORF1ab/nsp14A2-B	22	Q22K	Q5947K	nonsyn	Cag	Aag	5	5	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22del1	Q5947del1	del	caG	ca-	4	4	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22del2	Q5947del2	del	cAG	c--	4	4	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22Y	Q5947Y	nonsyn	CaG	TaT	3	3	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22E	Q5947E	nonsyn	CaG	GaA	2	2	1	18103-18105
ORF1ab/nsp14A2-B	22	Q22A	Q5947A	nonsyn	CAG	GCA	2	2	1	18103-18105

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2466	2790	All	0.000472
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	324	2790	All	0.000062
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	615	654	B.1.1.7	0.000551
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	39	654	B.1.1.7	0.000035
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	516	516	All	0.000099
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	359	359	B.1.1.303	0.991713
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	253	279	B.1.177	0.003331
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	26	279	B.1.177	0.000342
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	173	175	AY.4	0.000269
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	2	175	AY.4	0.000003
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	157	159	AY.43	0.000696
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	2	159	AY.43	0.000009
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	105	105	AY.4	0.000163
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	96	96	B.1.1.7	0.000086
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	90	91	B.1.617.2	0.000339
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	91	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	87	88	All	0.000017
ORF1ab/nsp14A2-B	22	Q22L	cAG	cTT	1	88	All	0
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	65	65	AY.36	0.009634
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	57	57	AY.9	0.003853
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	56	56	AY.103	0.000348
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	56	56	B.1.160	0.001747
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	47	53	AY.25	0.000283
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	6	53	AY.25	0.000036
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	45	45	B.1.1	0.000816
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	43	44	B.1	0.000394
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	44	B.1	0.000009
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	31	33	AY.103	0.000192
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	2	33	AY.103	0.000012
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	31	31	B.1.637	0.002265
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	29	29	AY.44	0.000177
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	20	28	P.1	0.000315
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	8	28	P.1	0.000126
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	27	27	B.1.617.2	0.000102
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	26	26	All	0.000005
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	26	26	AY.102	0.000689
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	25	25	AY.4	0.000039
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	25	25	B.1.1.7	0.000022
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	25	25	B.1.258	0.001664
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	24	24	All	0.000005
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	21	21	B.1.2	0.000185
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	17	17	AY.29	0.000268
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	15	16	AY.3	0.000149
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	16	AY.3	0.00001
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	15	15	AY.100	0.00069
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	15	15	AY.4.4	0.006137
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	14	14	AY.27	0.000906
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	14	14	AY.4.2	0.000304
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	14	14	B.1	0.000128
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	14	14	B.1.526	0.000329
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	12	13	AY.46.4	0.001974
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	13	AY.46.4	0.000165
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	13	13	AY.98.1	0.00063
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	13	13	B.1.582	0.006379
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	12	12	AY.43	0.000053
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	12	12	AY.6	0.000494
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	11	12	B.1.351	0.000327
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	12	B.1.351	0.00003
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	11	11	AY.5	0.000227
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	9	11	B.1.2	0.000079
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	2	11	B.1.2	0.000018
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	11	11	B.1.497	0.003462
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	10	10	AY.20	0.000389
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	10	10	AY.3	0.000099
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	10	10	AY.39	0.000247
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	9	10	B.1.1.207	0.010638
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	10	B.1.1.207	0.001182
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	10	10	B.1.177.77	0.007262
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	9	9	AY.3	0.00009
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	9	9	AY.34	0.000873
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	8	8	AY.24	0.003448
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	8	8	AY.26	0.000226
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	8	8	AY.29	0.000126
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	8	8	B.1.258.14	0.007843
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	8	8	B.1.362	0.012327
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	8	8	P.2	0.001493
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	7	7	AY.109	0.005178
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	7	7	AY.33	0.000467
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	7	7	B.1.1.191	0.033333
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	7	7	B.1.1.28	0.002179
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	7	7	B.1.177.86	0.001284
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	7	7	B.1.428	0.007143
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	7	7	B.1.429	0.000165
ORF1ab/nsp14A2-B	22	Q22P	cAg	cCg	6	6	All	0.000001
ORF1ab/nsp14A2-B	22	Q22R	cAG	cGA	3	6	All	0.000001
ORF1ab/nsp14A2-B	22	Q22R	cAg	cGg	3	6	All	0.000001
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	6	6	AY.39	0.000148
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	6	6	AY.46.6	0.000433
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	6	6	AY.6	0.000247
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	6	6	B.1.1.33	0.002525
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	6	6	B.1.229	0.058252
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	6	6	B.1.36	0.000875
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	6	6	B.1.36	0.000875
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	6	6	C.14	0.025974
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	A.2.5	0.002495
ORF1ab/nsp14A2-B	22	Q22K	Cag	Aag	5	5	All	0.000001
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	AY.16	0.001898
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	5	5	AY.25	0.00003
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	5	5	AY.44	0.00003
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	AY.46	0.00052
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	AY.61	0.000524
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	AY.99.2	0.000461
ORF1ab/nsp14A2-B	22	Q22P	cAg	cCg	5	5	B.1	0.000046
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	5	5	B.1.1	0.000091
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	B.1.1.25	0.002843
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	B.1.36.29	0.002587
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	5	5	B.1.427	0.000252
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	5	5	B.1.617.1	0.000645
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	5	5	B.1.621	0.000443
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	5	D.2	0.0003
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	5	D.2	0.000075
ORF1ab/nsp14A2-B	22	Q22del2	cAG	c--	4	4	All	0.000001
ORF1ab/nsp14A2-B	22	Q22del1	caG	ca-	4	4	All	0.000001
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	AY.117	0.000338
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	AY.118	0.000251
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	AY.23	0.000279
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	AY.41	0.001176
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	AY.50	0.003197
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	AY.75	0.000224
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	4	AY.98.1	0.000145
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	4	AY.98.1	0.000048
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	B.1.1.157	0.003653
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	4	4	B.1.1.519	0.000159
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	B.1.214.2	0.002398
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	B.1.243	0.000278
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	B.1.427	0.000202
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	B.1.438.1	0.000429
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	4	4	C.37	0.000464
ORF1ab/nsp14A2-B	22	Q22Y	CaG	TaT	3	3	All	0.000001
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	AY.100	0.000138
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	AY.120.1	0.000963
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	AY.34.1	0.00153
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	AY.46.4	0.000494
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.1.214	0.000166
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	B.1.1.222	0.000612
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	B.1.1.416	0.002715
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.177	0.00004
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	B.1.177.44	0.001557
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.177.73	0.001699
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.221.1	0.008721
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.234	0.000396
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.258	0.0002
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	B.1.311	0.000824
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	B.1.525	0.000339
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	B.1.558	0.013699
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	3	3	D.2	0.000225
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	3	3	P.1	0.000047
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	3	3	R.1	0.00027
ORF1ab/nsp14A2-B	22	Q22del2	cAG	c--	2	2		0.111111
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2		0.111111
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	2	2		0.111111
ORF1ab/nsp14A2-B	22	Q22A	CAG	GCA	2	2		0.111111
ORF1ab/nsp14A2-B	22	Q22E	CaG	GaA	2	2		0.111111
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	A.23.1	0.001408
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AH.3	0.007605
ORF1ab/nsp14A2-B	22	Q22E	CaG	GaA	2	2	All	0
ORF1ab/nsp14A2-B	22	Q22A	CAG	GCA	2	2	All	0
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.111	0.000366
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.114	0.000462
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.119	0.000071
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.120	0.000074
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	2	2	AY.14	0.000176
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2	AY.34	0.000194
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.4.2	0.000043
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.47	0.000062
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.5.3	0.000675
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.53	0.000575
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.74	0.000231
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	AY.98	0.000158
ORF1ab/nsp14A2-B	22	Q22L	cAG	cTT	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2	B.1.1.157	0.001826
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.1.214	0.000111
ORF1ab/nsp14A2-B	22	Q22Y	CaG	TaT	2	2	B.1.1.303	0.005525
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.1.306	0.000877
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.1.312	0.003824
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.1.432	0.002532
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.1.448	0.004065
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	2	2	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.177.21	0.000153
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.177.81	0.000379
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.221	0.000142
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.234	0.000264
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2	B.1.369	0.00057
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.504	0.0625
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.509	0.001732
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.517	0.000854
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.609	0.000959
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.617.1	0.000258
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	B.1.627	0.00404
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	2	2	C.37	0.000232
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	P.3	0.00319
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	2	2	Q.3	0.00029
ORF1ab/nsp14A2-B	22	Q22P	cAg	cCg	1	1		0.055556
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.10	0.00053
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.105	0.000643
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.115	0.005208
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.32	0.000532
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.37	0.000316
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	22	Q22del1	caG	ca-	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	22	Q22R	cAg	cGg	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	22	Q22K	Cag	Aag	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	22	Q22R	cAG	cGA	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	22	Q22del2	cAG	c--	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	22	Q22del1	caG	ca-	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.51	0.000909
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	AY.6	0.000041
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.62	0.000436
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.8	0.000606
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	AZ.2	0.000821
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B	0.000128
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B	0.000128
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	22	Q22K	Cag	Aag	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.117	0.009709
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.13	0.035714
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.135	0.004695
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.189	0.001513
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.1.192	0.002309
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.198	0.001468
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.1.262	0.015152
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.1.275	0.011236
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.286	0.002899
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.302	0.002075
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.325	0.025641
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.375	0.011905
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.389	0.006061
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	22	Q22Y	CaG	TaT	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.406	0.006494
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.417	0.002703
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.434	0.000349
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.442	0.018519
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.67	0.004566
ORF1ab/nsp14A2-B	22	Q22del2	cAG	c--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.110	0.004525
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.146	0.004237
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.160.16	0.000929
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.177.31	0.011494
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.177.57	0.000281
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.177.65	0.000665
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.177.85	0.005435
ORF1ab/nsp14A2-B	22	Q22del1	caG	ca-	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	22	Q22R	cAG	cGA	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.221.4	0.004167
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.222	0.001692
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	22	Q22R	cAg	cGg	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.279	0.000514
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.311	0.000275
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	22	Q22K	Cag	Aag	1	1	B.1.356	0.001727
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	22	Q22K	Cag	Aag	1	1	B.1.395	0.007042
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.416	0.001269
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	22	Q22del1	caG	ca-	1	1	B.1.452	0.013699
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.468	0.005714
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.469	0.00361
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.499	0.00105
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.499	0.00105
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.501	0.007353
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.523	0.002451
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	22	Q22del	CAG	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.590	0.004545
ORF1ab/nsp14A2-B	22	Q22X	Cag	Tag	1	1	B.1.590	0.004545
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	22	Q22R	cAG	cGA	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	22	Q22K	Cag	Aag	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.619.1	0.000641
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.621.1	0.000506
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.84	0.020833
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.1.9.4	0.006135
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	B.58	0.010204
ORF1ab/nsp14A2-B	22	Q22H	caG	caC	1	1	C.1.2	0.004255
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	C.35	0.000774
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	C.8	0.004464
ORF1ab/nsp14A2-B	22	Q22R	cAg	cGg	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	P.1.2	0.001156
ORF1ab/nsp14A2-B	22	Q22L	cAg	cTg	1	1	P.1.4	0.000977
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	P.7	0.004367
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	Q.3	0.000145
ORF1ab/nsp14A2-B	22	Q22H	caG	caT	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	22	Q22Q	caG	caA	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.