CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 212

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B212R212RR6137RsynagAagG915791500.99923618673-18675
ORF1ab/nsp14A2-B212R212RR6137RsynAgaCga915770.00076444218673-18675
ORF1ab/nsp14A2-B212R212KR6137KnonsynaGaaAa8007980.997518673-18675
ORF1ab/nsp14A2-B212R212KR6137KnonsynaGAaAG80020.002518673-18675
ORF1ab/nsp14A2-B212R212GR6137GnonsynAgaGga101101118673-18675
ORF1ab/nsp14A2-B212R212delR6137deldelAGA---9494118673-18675
ORF1ab/nsp14A2-B212R212IR6137InonsynaGaaTa6767118673-18675
ORF1ab/nsp14A2-B212R212SR6137SnonsynagAagC46410.89130418673-18675
ORF1ab/nsp14A2-B212R212SR6137SnonsynagAagT4650.10869618673-18675
ORF1ab/nsp14A2-B212R212TR6137TnonsynaGaaCa1818118673-18675
ORF1ab/nsp14A2-B212R212del1R6137del1delagAag-650.83333318673-18675
ORF1ab/nsp14A2-B212R212del1R6137del1delAga-ga610.16666718673-18675
ORF1ab/nsp14A2-B212R212del2R6137del2delAGa--a33118673-18675
ORF1ab/nsp14A2-B212R212LR6137LnonsynAGaTTa33118673-18675
ORF1ab/nsp14A2-B212R212XR6137XnonsynAgaTga22118673-18675
ORF1ab/nsp14A2-B212R212ER6137EnonsynAGaGAa11118673-18675

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B212R212RagAagG91509157All0.00175
ORF1ab/nsp14A2-B212R212RAgaCga79157All0.000001
ORF1ab/nsp14A2-B212R212RagAagG88718871AY.7.10.999775
ORF1ab/nsp14A2-B212R212KaGaaAa798800All0.000153
ORF1ab/nsp14A2-B212R212KaGAaAG2800All0
ORF1ab/nsp14A2-B212R212KaGaaAa343343B.1.1.2860.994203
ORF1ab/nsp14A2-B212R212RagAagG129129AY.420.00519
ORF1ab/nsp14A2-B212R212KaGaaAa115115B.10.001053
ORF1ab/nsp14A2-B212R212GAgaGga101101All0.000019
ORF1ab/nsp14A2-B212R212delAGA---9494All0.000018
ORF1ab/nsp14A2-B212R212IaGaaTa6767All0.000013
ORF1ab/nsp14A2-B212R212KaGaaAa6161AY.40.000095
ORF1ab/nsp14A2-B212R212SagAagC4146All0.000008
ORF1ab/nsp14A2-B212R212SagAagT546All0.000001
ORF1ab/nsp14A2-B212R212KaGaaAa4344B.1.1.70.000038
ORF1ab/nsp14A2-B212R212KaGAaAG144B.1.1.70.000001
ORF1ab/nsp14A2-B212R212delAGA---4242B.1.1.70.000038
ORF1ab/nsp14A2-B212R212GAgaGga4141B.1.6200.038789
ORF1ab/nsp14A2-B212R212RagAagG3031B.10.000275
ORF1ab/nsp14A2-B212R212RAgaCga131B.10.000009
ORF1ab/nsp14A2-B212R212KaGaaAa3131B.1.20.000273
ORF1ab/nsp14A2-B212R212IaGaaTa2626B.1.1.70.000023
ORF1ab/nsp14A2-B212R212KaGaaAa2525B.1.2430.00174
ORF1ab/nsp14A2-B212R212RagAagG2223B.1.1.70.00002
ORF1ab/nsp14A2-B212R212RAgaCga123B.1.1.70.000001
ORF1ab/nsp14A2-B212R212KaGaaAa2121AY.540.002002
ORF1ab/nsp14A2-B212R212KaGaaAa1919B.1.10.000345
ORF1ab/nsp14A2-B212R212TaGaaCa1818All0.000003
ORF1ab/nsp14A2-B212R212SagAagC1718B.1.1.70.000015
ORF1ab/nsp14A2-B212R212SagAagT118B.1.1.70.000001
ORF1ab/nsp14A2-B212R212RagAagG1617B.1.617.20.00006
ORF1ab/nsp14A2-B212R212RAgaCga117B.1.617.20.000004
ORF1ab/nsp14A2-B212R212KaGaaAa1212B.1.617.20.000045
ORF1ab/nsp14A2-B212R212RagAagG1111AY.440.000067
ORF1ab/nsp14A2-B212R212RagAagG1010AY.1130.001424
ORF1ab/nsp14A2-B212R212KaGaaAa99B.1.390.035156
ORF1ab/nsp14A2-B212R212KaGaaAa99P.10.000142
ORF1ab/nsp14A2-B212R212GAgaGga88B.1.1.70.000007
ORF1ab/nsp14A2-B212R212IaGaaTa88B.1.617.20.00003
ORF1ab/nsp14A2-B212R212KaGaaAa88P.1.170.001294
ORF1ab/nsp14A2-B212R212KaGaaAa77AY.390.000173
ORF1ab/nsp14A2-B212R212GAgaGga77AY.40.000011
ORF1ab/nsp14A2-B212R212delAGA---77B.1.1770.000092
ORF1ab/nsp14A2-B212R212RagAagG660.333333
ORF1ab/nsp14A2-B212R212del1agAag-56All0.000001
ORF1ab/nsp14A2-B212R212del1Aga-ga16All0
ORF1ab/nsp14A2-B212R212SagAagC66AY.250.000036
ORF1ab/nsp14A2-B212R212delAGA---66AY.40.000009
ORF1ab/nsp14A2-B212R212TaGaaCa66B.1.1.70.000005
ORF1ab/nsp14A2-B212R212KaGaaAa55AY.1020.000133
ORF1ab/nsp14A2-B212R212GAgaGga55B.10.000046
ORF1ab/nsp14A2-B212R212GAgaGga55B.1.1770.000066
ORF1ab/nsp14A2-B212R212KaGaaAa55B.1.2340.00066
ORF1ab/nsp14A2-B212R212KaGaaAa55B.1.4270.000252
ORF1ab/nsp14A2-B212R212TaGaaCa55B.1.5250.000566
ORF1ab/nsp14A2-B212R212SagAagC44AY.20.001425
ORF1ab/nsp14A2-B212R212RagAagG44AY.260.000113
ORF1ab/nsp14A2-B212R212IaGaaTa44AY.40.000006
ORF1ab/nsp14A2-B212R212RagAagG44AY.40.000006
ORF1ab/nsp14A2-B212R212RagAagG44AY.4.30.003367
ORF1ab/nsp14A2-B212R212GAgaGga44AY.430.000018
ORF1ab/nsp14A2-B212R212SagAagC44AY.980.000316
ORF1ab/nsp14A2-B212R212IaGaaTa44B.1.1.1760.001757
ORF1ab/nsp14A2-B212R212KaGaaAa44B.1.1.3480.003185
ORF1ab/nsp14A2-B212R212KaGaaAa44B.1.1770.000053
ORF1ab/nsp14A2-B212R212KaGaaAa44B.1.177.750.004162
ORF1ab/nsp14A2-B212R212RagAagG44B.1.3510.000119
ORF1ab/nsp14A2-B212R212LAGaTTa33All0.000001
ORF1ab/nsp14A2-B212R212del2AGa--a33All0.000001
ORF1ab/nsp14A2-B212R212GAgaGga33AY.1030.000019
ORF1ab/nsp14A2-B212R212KaGaaAa33AY.250.000018
ORF1ab/nsp14A2-B212R212KaGaaAa33AY.330.0002
ORF1ab/nsp14A2-B212R212GAgaGga33AY.39.10.000119
ORF1ab/nsp14A2-B212R212TaGaaCa33AY.430.000013
ORF1ab/nsp14A2-B212R212RagAagG33AY.430.000013
ORF1ab/nsp14A2-B212R212RagAagG33AY.70.000588
ORF1ab/nsp14A2-B212R212RagAagG33B.1.10.000054
ORF1ab/nsp14A2-B212R212IaGaaTa33B.1.1.3010.003538
ORF1ab/nsp14A2-B212R212del1agAag-33B.1.1.70.000003
ORF1ab/nsp14A2-B212R212RagAagG33B.1.1600.000094
ORF1ab/nsp14A2-B212R212RagAagG33B.1.177.790.007026
ORF1ab/nsp14A2-B212R212KaGaaAa33B.1.351.20.000908
ORF1ab/nsp14A2-B212R212KaGaaAa33B.1.617.10.000387
ORF1ab/nsp14A2-B212R212IaGaaTa33P.10.000047
ORF1ab/nsp14A2-B212R212KaGaaAa33Q.10.000379
ORF1ab/nsp14A2-B212R212XAgaTga22All0
ORF1ab/nsp14A2-B212R212KaGaaAa22AY.1030.000012
ORF1ab/nsp14A2-B212R212IaGaaTa22AY.1030.000012
ORF1ab/nsp14A2-B212R212SagAagC22AY.1030.000012
ORF1ab/nsp14A2-B212R212RagAagG22AY.1170.000169
ORF1ab/nsp14A2-B212R212GAgaGga22AY.330.000134
ORF1ab/nsp14A2-B212R212SagAagC22AY.40.000003
ORF1ab/nsp14A2-B212R212delAGA---22AY.430.000009
ORF1ab/nsp14A2-B212R212IaGaaTa22AY.430.000009
ORF1ab/nsp14A2-B212R212LAGaTTa22AY.430.000009
ORF1ab/nsp14A2-B212R212KaGaaAa22AY.430.000009
ORF1ab/nsp14A2-B212R212KaGaaAa22AY.440.000012
ORF1ab/nsp14A2-B212R212RagAagG22AY.46.60.000144
ORF1ab/nsp14A2-B212R212KaGaaAa22AY.750.000112
ORF1ab/nsp14A2-B212R212IaGaaTa22B.10.000018
ORF1ab/nsp14A2-B212R212GAgaGga22B.1.10.000036
ORF1ab/nsp14A2-B212R212delAGA---22B.1.10.000036
ORF1ab/nsp14A2-B212R212KaGaaAa22B.1.1.1800.021505
ORF1ab/nsp14A2-B212R212KaGaaAa22B.1.1.5190.000079
ORF1ab/nsp14A2-B212R212KaGaaAa22B.1.1040.00738
ORF1ab/nsp14A2-B212R212del2AGa--a22B.1.1770.000026
ORF1ab/nsp14A2-B212R212delAGA---22B.1.177.40.000422
ORF1ab/nsp14A2-B212R212delAGA---22B.1.177.690.002967
ORF1ab/nsp14A2-B212R212GAgaGga22B.1.2580.000133
ORF1ab/nsp14A2-B212R212SagAagC22B.1.3510.000059
ORF1ab/nsp14A2-B212R212IaGaaTa22B.1.3510.000059
ORF1ab/nsp14A2-B212R212GAgaGga22B.1.4290.000047
ORF1ab/nsp14A2-B212R212GAgaGga22B.1.5170.000854
ORF1ab/nsp14A2-B212R212KaGaaAa22B.1.5260.000047
ORF1ab/nsp14A2-B212R212RagAagG22B.1.5950.000522
ORF1ab/nsp14A2-B212R212RagAagG22B.1.617.10.000258
ORF1ab/nsp14A2-B212R212delAGA---22B.1.617.20.000008
ORF1ab/nsp14A2-B212R212GAgaGga22B.1.617.20.000008
ORF1ab/nsp14A2-B212R212SagAagC12B.1.617.20.000004
ORF1ab/nsp14A2-B212R212SagAagT12B.1.617.20.000004
ORF1ab/nsp14A2-B212R212KaGaaAa22P.1.160.000748
ORF1ab/nsp14A2-B212R212IaGaaTa11A.2.20.001689
ORF1ab/nsp14A2-B212R212delAGA---11AD.20.000219
ORF1ab/nsp14A2-B212R212EAGaGAa11All0
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.1000.000046
ORF1ab/nsp14A2-B212R212RagAagG11AY.1030.000006
ORF1ab/nsp14A2-B212R212RagAagG11AY.1110.000183
ORF1ab/nsp14A2-B212R212GAgaGga11AY.1170.000085
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.1190.000035
ORF1ab/nsp14A2-B212R212delAGA---11AY.1200.000037
ORF1ab/nsp14A2-B212R212GAgaGga11AY.1210.000135
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.140.000088
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.16.10.00047
ORF1ab/nsp14A2-B212R212RagAagG11AY.200.000039
ORF1ab/nsp14A2-B212R212RagAagG11AY.240.000431
ORF1ab/nsp14A2-B212R212RagAagG11AY.250.000006
ORF1ab/nsp14A2-B212R212GAgaGga11AY.250.000006
ORF1ab/nsp14A2-B212R212delAGA---11AY.250.000006
ORF1ab/nsp14A2-B212R212IaGaaTa11AY.250.000006
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.260.000028
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.290.000016
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.30.00001
ORF1ab/nsp14A2-B212R212LAGaTTa11AY.30.00001
ORF1ab/nsp14A2-B212R212RAgaCga11AY.30.00001
ORF1ab/nsp14A2-B212R212delAGA---11AY.330.000067
ORF1ab/nsp14A2-B212R212RagAagG11AY.390.000025
ORF1ab/nsp14A2-B212R212IaGaaTa11AY.390.000025
ORF1ab/nsp14A2-B212R212GAgaGga11AY.4.20.000022
ORF1ab/nsp14A2-B212R212delAGA---11AY.4.50.000107
ORF1ab/nsp14A2-B212R212RagAagG11AY.400.000964
ORF1ab/nsp14A2-B212R212SagAagT11AY.430.000004
ORF1ab/nsp14A2-B212R212EAGaGAa11AY.430.000004
ORF1ab/nsp14A2-B212R212XAgaTga11AY.440.000006
ORF1ab/nsp14A2-B212R212SagAagT11AY.440.000006
ORF1ab/nsp14A2-B212R212delAGA---11AY.440.000006
ORF1ab/nsp14A2-B212R212RagAagG11AY.450.000122
ORF1ab/nsp14A2-B212R212RagAagG11AY.46.10.001027
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.470.000031
ORF1ab/nsp14A2-B212R212IaGaaTa11AY.470.000031
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.60.000041
ORF1ab/nsp14A2-B212R212delAGA---11AY.60.000041
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.610.000105
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.650.000533
ORF1ab/nsp14A2-B212R212delAGA---11AY.670.000464
ORF1ab/nsp14A2-B212R212KaGAaAG11AY.7.10.000113
ORF1ab/nsp14A2-B212R212SagAagC11AY.7.20.000559
ORF1ab/nsp14A2-B212R212delAGA---11AY.720.001361
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.730.000665
ORF1ab/nsp14A2-B212R212IaGaaTa11AY.830.001724
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.850.000427
ORF1ab/nsp14A2-B212R212GAgaGga11AY.860.00083
ORF1ab/nsp14A2-B212R212delAGA---11AY.90.000068
ORF1ab/nsp14A2-B212R212KaGaaAa11AY.9.20.000037
ORF1ab/nsp14A2-B212R212GAgaGga11AY.9.20.000037
ORF1ab/nsp14A2-B212R212IaGaaTa11AY.990.001049
ORF1ab/nsp14A2-B212R212del1Aga-ga11B0.000128
ORF1ab/nsp14A2-B212R212SagAagC11B.10.000009
ORF1ab/nsp14A2-B212R212delAGA---11B.10.000009
ORF1ab/nsp14A2-B212R212del2AGa--a11B.10.000009
ORF1ab/nsp14A2-B212R212SagAagT11B.1.10.000018
ORF1ab/nsp14A2-B212R212RagAagG11B.1.1.10.000327
ORF1ab/nsp14A2-B212R212IaGaaTa11B.1.1.2140.000055
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.1.280.000311
ORF1ab/nsp14A2-B212R212TaGaaCa11B.1.1.2880.001916
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.1.3170.000412
ORF1ab/nsp14A2-B212R212GAgaGga11B.1.1.3180.000302
ORF1ab/nsp14A2-B212R212delAGA---11B.1.1.390.00051
ORF1ab/nsp14A2-B212R212GAgaGga11B.1.1.4200.001006
ORF1ab/nsp14A2-B212R212RAgaCga11B.1.1570.002985
ORF1ab/nsp14A2-B212R212TaGaaCa11B.1.1600.000031
ORF1ab/nsp14A2-B212R212IaGaaTa11B.1.1600.000031
ORF1ab/nsp14A2-B212R212del1agAag-11B.1.1770.000013
ORF1ab/nsp14A2-B212R212RAgaCga11B.1.1770.000013
ORF1ab/nsp14A2-B212R212IaGaaTa11B.1.1770.000013
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.110.001698
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.177.210.000076
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.210.000076
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.177.450.000381
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.540.000606
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.630.002703
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.177.730.000566
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.760.002494
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.810.000189
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.177.810.000189
ORF1ab/nsp14A2-B212R212delAGA---11B.1.177.830.001481
ORF1ab/nsp14A2-B212R212del1agAag-11B.1.20.000009
ORF1ab/nsp14A2-B212R212RagAagG11B.1.20.000009
ORF1ab/nsp14A2-B212R212TaGaaCa11B.1.20.000009
ORF1ab/nsp14A2-B212R212delAGA---11B.1.20.000009
ORF1ab/nsp14A2-B212R212GAgaGga11B.1.20.000009
ORF1ab/nsp14A2-B212R212SagAagC11B.1.2340.000132
ORF1ab/nsp14A2-B212R212RagAagG11B.1.2340.000132
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.2400.000216
ORF1ab/nsp14A2-B212R212RagAagG11B.1.2400.000216
ORF1ab/nsp14A2-B212R212delAGA---11B.1.2420.018868
ORF1ab/nsp14A2-B212R212delAGA---11B.1.2580.000067
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.258.170.000104
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.3110.000275
ORF1ab/nsp14A2-B212R212delAGA---11B.1.3510.00003
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.3510.00003
ORF1ab/nsp14A2-B212R212delAGA---11B.1.36.170.000494
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.36.80.001
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.36.90.003215
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.4020.009804
ORF1ab/nsp14A2-B212R212delAGA---11B.1.4150.014286
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.5750.000303
ORF1ab/nsp14A2-B212R212RagAagG11B.1.5800.004065
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.5880.00091
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.5960.000087
ORF1ab/nsp14A2-B212R212RagAagG11B.1.6210.000089
ORF1ab/nsp14A2-B212R212GAgaGga11B.1.6210.000089
ORF1ab/nsp14A2-B212R212delAGA---11B.1.6210.000089
ORF1ab/nsp14A2-B212R212delAGA---11B.1.6300.005236
ORF1ab/nsp14A2-B212R212TaGaaCa11B.1.6360.006711
ORF1ab/nsp14A2-B212R212KaGaaAa11B.1.6370.000073
ORF1ab/nsp14A2-B212R212GAgaGga11B.30.000831
ORF1ab/nsp14A2-B212R212KaGaaAa11B.60.00091
ORF1ab/nsp14A2-B212R212IaGaaTa11B.610.005747
ORF1ab/nsp14A2-B212R212delAGA---11C.360.000911
ORF1ab/nsp14A2-B212R212GAgaGga11C.370.000116
ORF1ab/nsp14A2-B212R212KaGaaAa11C.370.000116
ORF1ab/nsp14A2-B212R212IaGaaTa11D.20.000075
ORF1ab/nsp14A2-B212R212RAgaCga11D.20.000075
ORF1ab/nsp14A2-B212R212XAgaTga11D.20.000075
ORF1ab/nsp14A2-B212R212RagAagG11P.10.000016
ORF1ab/nsp14A2-B212R212GAgaGga11P.10.000016
ORF1ab/nsp14A2-B212R212delAGA---11P.1.10.000318
ORF1ab/nsp14A2-B212R212KaGaaAa11P.1.120.000484
ORF1ab/nsp14A2-B212R212KaGaaAa11P.1.140.000048