CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 203

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	203	P203L	P6128L	nonsyn	cCt	cTt	11985	11984	0.999917	18646-18648
ORF1ab/nsp14A2-B	203	P203L	P6128L	nonsyn	cCT	cTC	11985	1	0.0000834376	18646-18648
ORF1ab/nsp14A2-B	203	P203S	P6128S	nonsyn	Cct	Tct	2529	2528	0.999605	18646-18648
ORF1ab/nsp14A2-B	203	P203S	P6128S	nonsyn	CcT	TcC	2529	1	0.000395413	18646-18648
ORF1ab/nsp14A2-B	203	P203P	P6128P	syn	ccT	ccC	622	331	0.532154	18646-18648
ORF1ab/nsp14A2-B	203	P203P	P6128P	syn	ccT	ccA	622	179	0.287781	18646-18648
ORF1ab/nsp14A2-B	203	P203P	P6128P	syn	ccT	ccG	622	112	0.180064	18646-18648
ORF1ab/nsp14A2-B	203	P203H	P6128H	nonsyn	cCt	cAt	442	442	1	18646-18648
ORF1ab/nsp14A2-B	203	P203del	P6128del	del	CCT	---	88	88	1	18646-18648
ORF1ab/nsp14A2-B	203	P203T	P6128T	nonsyn	Cct	Act	80	79	0.9875	18646-18648
ORF1ab/nsp14A2-B	203	P203T	P6128T	nonsyn	CcT	AcC	80	1	0.0125	18646-18648
ORF1ab/nsp14A2-B	203	P203F	P6128F	nonsyn	CCt	TTt	5	5	1	18646-18648
ORF1ab/nsp14A2-B	203	P203del1	P6128del1	del	Cct	-ct	4	2	0.5	18646-18648
ORF1ab/nsp14A2-B	203	P203del1	P6128del1	del	ccT	cc-	4	2	0.5	18646-18648
ORF1ab/nsp14A2-B	203	P203I	P6128I	nonsyn	CCt	ATt	3	2	0.666667	18646-18648
ORF1ab/nsp14A2-B	203	P203I	P6128I	nonsyn	CCT	ATC	3	1	0.333333	18646-18648
ORF1ab/nsp14A2-B	203	P203R	P6128R	nonsyn	cCt	cGt	2	2	1	18646-18648
ORF1ab/nsp14A2-B	203	P203A	P6128A	nonsyn	Cct	Gct	2	2	1	18646-18648
ORF1ab/nsp14A2-B	203	P203V	P6128V	nonsyn	CCt	GTt	1	1	1	18646-18648
ORF1ab/nsp14A2-B	203	P203N	P6128N	nonsyn	CCt	AAt	1	1	1	18646-18648
ORF1ab/nsp14A2-B	203	P203del2	P6128del2	del	cCT	c--	1	1	1	18646-18648

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	11984	11985	All	0.002292
ORF1ab/nsp14A2-B	203	P203L	cCT	cTC	1	11985	All	0
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5616	5616	B.1.1.7	0.005028
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2528	2529	All	0.000484
ORF1ab/nsp14A2-B	203	P203S	CcT	TcC	1	2529	All	0
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	858	858	AY.34	0.083196
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	711	711	AY.4	0.001107
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	331	622	All	0.000063
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	179	622	All	0.000034
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	112	622	All	0.000021
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	442	442	All	0.000085
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	371	371	B.1.1.7	0.000332
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	363	363	AY.4	0.000565
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	307	307	B.1.351	0.009126
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	295	295	B.1.2	0.002598
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	253	253	B.1.1.39	0.12895
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	214	214	AY.26	0.006058
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	203	203	P.1.9	0.975962
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	203	203	W.2	0.980676
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	193	193	B.1.617.2	0.000727
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	159	159	B.1	0.001456
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	155	155	AY.74	0.017925
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	153	153	AY.103	0.00095
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	149	149	P.1	0.002347
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	148	148	B.1.177.82	0.070644
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	140	140	AY.43	0.00062
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	130	130	AY.51	0.118182
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	127	127	B.1.617.2	0.000478
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	126	126	P.1	0.001985
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	125	125	AY.103	0.000776
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	111	120	AY.44	0.000676
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	7	120	AY.44	0.000043
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	2	120	AY.44	0.000012
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	119	119	B.1.177	0.001567
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	115	115	B.1.429	0.002706
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	107	107	AY.71	0.050831
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	107	107	B.1.466.2	0.041862
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	97	97	B.1.1.519	0.003852
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	91	91	B.1.258.17	0.009461
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	89	89	AY.4.2	0.00193
ORF1ab/nsp14A2-B	203	P203del	CCT	---	88	88	All	0.000017
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	83	83	AY.44	0.000505
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	82	82	P.1.7	0.026181
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	82	82	Q.3	0.011893
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	79	80	All	0.000015
ORF1ab/nsp14A2-B	203	P203T	CcT	AcC	1	80	All	0
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	77	77	B.1.258	0.005124
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	76	76	AY.25	0.000457
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	67	68	B.1.1	0.001215
ORF1ab/nsp14A2-B	203	P203L	cCT	cTC	1	68	B.1.1	0.000018
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	63	63	A.15	1
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	62	62	B.1.177	0.000816
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	60	60	AY.119	0.002118
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	59	59	AY.6	0.002427
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	56	56	AY.3	0.000557
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	53	53	B.1.526	0.001246
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	52	52	B.1.1.205	0.193309
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	48	51	AY.100	0.002208
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	51	AY.100	0.000092
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	51	AY.100	0.000046
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	50	50	AY.29	0.000789
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	50	50	B.1.1.7	0.000045
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	47	47	B.1.637	0.003434
ORF1ab/nsp14A2-B	203	P203del	CCT	---	44	44	B.1.1.7	0.000039
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	42	42	AY.111	0.007692
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	21	39	B.1.617.2	0.000079
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	15	39	B.1.617.2	0.000056
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	3	39	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	38	38	B.1.1.7	0.000034
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	30	38	B.1.1.7	0.000027
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	5	38	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	3	38	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	36	36	B.1	0.00033
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	34	34	B.1	0.000311
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	34	34	B.1.1.50	0.023082
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	33	33	AY.25	0.000198
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	32	32	AY.46.6	0.002311
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	32	32	B.1.427	0.001616
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	30	31	AY.44	0.000183
ORF1ab/nsp14A2-B	203	P203S	CcT	TcC	1	31	AY.44	0.000006
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	31	31	B.1.221	0.002202
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	30	30	AY.102	0.000795
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	30	30	AY.103	0.000186
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	28	28	AY.43	0.000124
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	28	28	AY.5	0.000578
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	27	27	AY.20	0.001049
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	27	27	N.1	0.457627
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	26	26	AY.100	0.001196
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	26	26	B.1.525	0.002942
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	25	25	AY.100	0.00115
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	25	25	AY.3	0.000249
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	24	24	AY.14	0.002112
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	24	24	AY.7.1	0.002705
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	24	24	B.1.36.18	0.010084
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	23	23	AY.120	0.000855
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	23	23	AY.3.1	0.001961
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	23	23	AY.39	0.000568
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	19	22	AY.3	0.000189
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	3	22	AY.3	0.00003
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	22	22	AY.39	0.000544
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	21	21	AY.61	0.0022
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	20	20	AY.4	0.000031
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	20	20	B.1.258	0.001331
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	20	20	B.1.617.2	0.000075
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	18	19	AY.3.1	0.001535
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	19	AY.3.1	0.000085
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	10	19	AY.4	0.000016
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	7	19	AY.4	0.000011
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	2	19	AY.4	0.000003
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	19	19	AY.47	0.000591
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	19	19	B.1.258	0.001264
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	18	18	A.23.1	0.012676
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	18	18	AY.30	0.007123
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	18	18	P.1	0.000284
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	17	17	AY.20	0.000661
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	17	17	B.1.596	0.001481
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	16	16	A.2.5	0.007984
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	16	16	AY.5	0.00033
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	16	16	B.1.2	0.000141
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	16	16	B.1.221	0.001137
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	15	15	AE.8	0.007335
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	15	15	AY.121	0.00203
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	8	15	B.1	0.000073
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	7	15	B.1	0.000064
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	15	15	B.1.243	0.001044
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	15	15	B.1.525	0.001697
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	15	15	B.1.621	0.001328
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	15	15	B.55	0.044248
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	14	14	AY.103	0.000087
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	14	14	AY.111	0.002564
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	14	14	AY.42	0.000563
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	14	14	B.1.160	0.000437
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	14	14	B.1.575	0.004248
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	13	13	AY.4.2	0.000282
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	13	13	AY.5.4	0.003597
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	13	13	AY.62	0.005664
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	13	13	B	0.001662
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	13	13	B.1.258.17	0.001352
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	13	13	B.1.438.1	0.001394
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	12	12	AY.3.1	0.001023
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	12	12	AY.47	0.000373
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	12	12	AY.75.1	0.002164
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	12	12	B.1.36	0.001751
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	11	11	B.1.1.297	0.024609
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	11	11	B.1.1.47	0.058824
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	11	11	B.1.243	0.000765
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	10	10	AY.102	0.000265
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	10	10	AY.39.1	0.000396
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	10	10	B.1.1.214	0.000555
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	10	10	B.1.1.519	0.000397
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	10	10	B.1.177.44	0.005189
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	10	10	B.1.234	0.001319
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	10	10	B.1.411	0.037037
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	10	10	C.1	0.023923
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	9	9	AY.113	0.001282
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	9	9	AY.23	0.000628
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	9	9	AY.43	0.00004
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	8	9	B.1.160	0.00025
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	1	9	B.1.160	0.000031
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	9	9	B.1.177.41	0.0225
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	9	9	B.1.375	0.007377
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	9	9	B.1.637	0.000658
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	9	9	L.3	0.031915
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	9	9	P.1.15	0.002091
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	AY.107	0.003728
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	AY.118	0.000501
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	5	8	AY.43	0.000022
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	2	8	AY.43	0.000009
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	1	8	AY.43	0.000004
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	AY.54	0.000763
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	AY.79	0.009685
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	AY.83	0.013793
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	B.1.1.241	0.016563
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	B.1.177.81	0.001515
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	8	8	P.1.14	0.000382
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	AY.110	0.000789
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	7	7	AY.42	0.000282
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	7	7	AY.44	0.000043
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	AY.45	0.000852
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	7	7	AY.46	0.000729
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	7	7	AY.54	0.000667
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	7	7	AY.6	0.000288
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	AY.69	0.001307
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	AY.9.2	0.000257
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	7	7	B.1.1	0.000127
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	B.1.1.25	0.00398
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	B.1.1.318	0.002112
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	7	7	B.1.1.519	0.000278
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	7	7	B.1.160	0.000218
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	C.37	0.000812
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	P.1.15	0.001626
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	7	7	Q.8	0.001154
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	6	6	AY.25	0.000036
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	AY.33	0.000401
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	6	6	AY.34	0.000582
ORF1ab/nsp14A2-B	203	P203del	CCT	---	6	6	AY.4	0.000009
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	6	6	AY.4.2	0.00013
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	AY.98.1	0.000291
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	6	6	B.1.1.214	0.000333
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	B.1.1.28	0.001867
ORF1ab/nsp14A2-B	203	P203del	CCT	---	6	6	B.1.177	0.000079
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	B.1.177.60	0.001311
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	6	6	B.1.526	0.000141
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	D.2	0.00045
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	Q.1	0.000758
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	6	6	R.1	0.00054
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	A.27	0.008278
ORF1ab/nsp14A2-B	203	P203F	CCt	TTt	5	5	All	0.000001
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	5	5	AY.117	0.000423
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	AY.13	0.000805
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	AY.4.2.1	0.000745
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	5	5	AY.46.6	0.000361
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	AY.75	0.00028
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	B.1.1.214	0.000277
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	B.1.1.221	0.050505
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	4	5	B.1.1.284	0.00043
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	5	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	B.1.1.448	0.010163
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	B.1.400	0.002145
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	B.1.575	0.001517
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	B.1.577	0.003436
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	5	5	P.1.1	0.001588
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	5	5	P.1.2	0.00578
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	5	5	P.2	0.000933
ORF1ab/nsp14A2-B	203	P203del1	ccT	cc-	2	4	All	0
ORF1ab/nsp14A2-B	203	P203del1	Cct	-ct	2	4	All	0
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	AY.120.2.1	0.001993
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	4	4	AY.25	0.000024
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	4	4	AY.29	0.000063
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	4	4	AY.32	0.00213
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	4	4	AY.33	0.000267
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	4	4	AY.37	0.001264
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	4	4	AY.39	0.000099
ORF1ab/nsp14A2-B	203	P203del	CCT	---	4	4	AY.4.5	0.00043
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	4	4	AY.5	0.000083
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	AY.9	0.00027
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	AY.98	0.000316
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	AY.99.2	0.000369
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	AZ.2	0.003284
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	4	4	B.1.1	0.000073
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	B.1.1.161	0.014134
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	4	4	B.1.162	0.020101
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	4	4	B.1.177.21	0.000306
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	B.1.177.77	0.002905
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	B.1.177.86	0.000734
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	B.1.351.3	0.003506
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	B.1.617.1	0.000516
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	B.1.628	0.001409
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	C.36.1	0.016598
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	4	4	C.37	0.000464
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	P.1.10	0.001078
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	4	4	Q.3	0.00058
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	A.2.5	0.001497
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	3	3	A.21	0.00831
ORF1ab/nsp14A2-B	203	P203I	CCt	ATt	2	3	All	0
ORF1ab/nsp14A2-B	203	P203I	CCT	ATC	1	3	All	0
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AM.4	0.010714
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	2	3	AY.102	0.000053
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	3	AY.102	0.000027
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.118	0.000188
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.16.1	0.00141
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.23	0.000209
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.27	0.000194
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	3	AY.29	0.000032
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	3	AY.29	0.000016
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	3	3	AY.3	0.00003
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	3	3	AY.38	0.001498
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.39.2	0.004622
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.40	0.002893
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.41	0.000882
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.45	0.000365
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.5.3	0.001012
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.5.4	0.00083
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	3	3	AY.6	0.000123
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.65	0.001599
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.70	0.000626
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.74	0.000347
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.78	0.004622
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	AY.80	0.003386
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	3	3	AY.9.2	0.00011
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.93	0.000819
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	AY.95	0.002283
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	3	3	AY.99.2	0.000276
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	3	B.1.1	0.000036
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	2	3	B.1.1	0.000036
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	1	3	B.1.1	0.000018
ORF1ab/nsp14A2-B	203	P203T	CcT	AcC	1	3	B.1.1	0.000018
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.1.101	0.03
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.1.153	0.003286
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	3	3	B.1.1.207	0.003546
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.1.284	0.000322
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.1.294	0.003797
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.1.306	0.001315
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.1.348	0.002389
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.1.526	0.010638
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.110.3	0.002155
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.111	0.003525
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	3	3	B.1.177	0.00004
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.177.87	0.002183
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.214.2	0.001799
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.221.4	0.0125
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	3	3	B.1.351	0.000089
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.351.2	0.000908
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.36	0.000438
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.36.29	0.001552
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	3	3	B.1.526	0.000071
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.538	0.024194
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.561	0.001191
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	B.1.576	0.00272
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	B.1.617.1	0.000387
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	3	3	B.1.617.1	0.000387
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	P.1.1	0.000953
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	3	3	P.1.17	0.000485
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	3	3	P.2	0.00056
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	A	0.000774
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	A.17	0.181818
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	A.2.5	0.000998
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	A.2.5.1	0.009615
ORF1ab/nsp14A2-B	203	P203R	cCt	cGt	2	2	All	0
ORF1ab/nsp14A2-B	203	P203A	Cct	Gct	2	2	All	0
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.10	0.00106
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	2	2	AY.100	0.000092
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.108	0.002205
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.110	0.000225
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.116.1	0.000623
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.117	0.000169
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.120	0.000074
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.120.1	0.000642
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.120.1	0.000642
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.16	0.000759
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.16.1	0.00094
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.19	0.002281
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	2	2	AY.20	0.000078
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.34.1	0.00102
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.35	0.000466
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.35	0.000466
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.36	0.000296
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.37	0.000632
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.38	0.000999
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.4.4	0.000818
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.4.4	0.000818
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.46.4	0.000329
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.48	0.00093
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	2	AY.54	0.000191
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.59	0.001059
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.68	0.000547
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	AY.71	0.00095
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.72	0.002721
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.75.1	0.000361
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	2	AY.75.1	0.000361
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.86	0.00166
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.9.1	0.000167
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	AY.9.2.1	0.003953
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	203	P203I	CCt	ATt	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	203	P203I	CCT	ATC	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.1.219	0.01
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.1.222	0.000408
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.1.291	0.001485
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.1.324	0.105263
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.1.37	0.000386
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.1.416	0.00181
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.1.48	0.005747
ORF1ab/nsp14A2-B	203	P203del1	Cct	-ct	1	2	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	203	P203del1	ccT	cc-	1	2	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.160.21	0.040816
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.177.15	0.001262
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.177.3	0.015267
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.177.56	0.001335
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.177.65	0.001331
ORF1ab/nsp14A2-B	203	P203del	CCT	---	2	2	B.1.177.69	0.002967
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.177.73	0.001133
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.234	0.000264
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	2	2	B.1.258	0.000133
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.265	0.002541
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.311	0.000549
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.311	0.000549
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.315	0.012121
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.351	0.000059
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.36.25	0.004415
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.369	0.00057
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.382	0.017857
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.39	0.007812
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.396	0.001411
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.425	0.005988
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.459	0.008163
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.466.2	0.000782
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.468	0.011429
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.470	0.002809
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.497	0.00063
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.560	0.009259
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.561	0.000794
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.603	0.021277
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.1.609	0.000959
ORF1ab/nsp14A2-B	203	P203del	CCT	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.620	0.001892
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	B.1.623	0.001073
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	B.40	0.000729
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	C.14	0.008658
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	C.36.3	0.001134
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	2	2	P.1.1	0.000635
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	2	2	P.1.12	0.000968
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	2	2	P.1.13	0.001797
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	2	2	P.1.17	0.000324
ORF1ab/nsp14A2-B	203	P203V	CCt	GTt	1	1		0.055556
ORF1ab/nsp14A2-B	203	P203A	Cct	Gct	1	1		0.055556
ORF1ab/nsp14A2-B	203	P203F	CCt	TTt	1	1		0.055556
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1		0.055556
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1		0.055556
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	A	0.000387
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	A.27	0.001656
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	203	P203N	CCt	AAt	1	1	All	0
ORF1ab/nsp14A2-B	203	P203del2	cCT	c--	1	1	All	0
ORF1ab/nsp14A2-B	203	P203V	CCt	GTt	1	1	All	0
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AN.1	0.02
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AU.2	0.002421
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AU.3	0.00211
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.10	0.00053
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	AY.10	0.00053
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.107	0.000466
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.108	0.001103
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.114	0.000231
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.16	0.00038
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.30	0.000396
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.32	0.000532
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.32	0.000532
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.39.2	0.001541
ORF1ab/nsp14A2-B	203	P203R	cCt	cGt	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	203	P203I	CCt	ATt	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.4.1	0.000737
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.43	0.000004
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.46.3	0.000934
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.46.5	0.000198
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	AY.50	0.000799
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.56	0.001605
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.68	0.000274
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	203	P203F	CCt	TTt	1	1	AY.74	0.000116
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.76	0.004831
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	AY.98	0.000079
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	AY.98.1	0.000048
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	AY.99	0.001049
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B	0.000128
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B	0.000128
ORF1ab/nsp14A2-B	203	P203del1	Cct	-ct	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	203	P203N	CCt	AAt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	203	P203A	Cct	Gct	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	203	P203R	cCt	cGt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	203	P203F	CCt	TTt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.129	0.009174
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.141	0.002012
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.141	0.002012
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.149	0.016393
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.15	0.013514
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.170	0.001247
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.176	0.000439
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.181	0.004545
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.196	0.005714
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.198	0.001468
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.210	0.005714
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.230	0.009174
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.1.231	0.003096
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	B.1.1.232	0.001815
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.265	0.003155
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.289	0.002083
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.297	0.002237
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.305	0.003861
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.312	0.001912
ORF1ab/nsp14A2-B	203	P203del1	ccT	cc-	1	1	B.1.1.312	0.001912
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.316	0.000925
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.317	0.000412
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.326	0.001761
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.329	0.003846
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.333	0.001076
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.354	0.004386
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.371	0.010417
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.385	0.004464
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.397	0.002252
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.432	0.001266
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.434	0.000349
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.486	0.001577
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.507	0.008696
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.1.523	0.001563
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.523	0.001563
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.524	0.020833
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.526	0.003546
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	203	P203del2	cCT	c--	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	203	P203F	CCt	TTt	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.126	0.001276
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.160.12	0.00641
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.160.23	0.004831
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.160.26	0.002421
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.160.32	0.004292
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.177.15	0.000631
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.177.21	0.000076
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.177.52	0.001757
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.177.57	0.000281
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.177.60	0.000218
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.177.77	0.000726
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.177.82	0.000477
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.192	0.009259
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.221.3	0.000833
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.223	0.002778
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.232	0.000537
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.260	0.003344
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.265	0.001271
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.301	0.005917
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.304	0.023256
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.306	0.005714
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.320	0.001245
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.320	0.001245
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.333	0.010526
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.346	0.001311
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.351.3	0.000876
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.351.3	0.000876
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.356	0.001727
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.36.1	0.00114
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.36.17	0.000494
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.36.31	0.001751
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.36.9	0.003215
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.362	0.001541
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.362	0.001541
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.367	0.000792
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	1	1	B.1.393	0.028571
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.404	0.001302
ORF1ab/nsp14A2-B	203	P203F	CCt	TTt	1	1	B.1.411	0.003704
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.416	0.001269
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.416	0.001269
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.459	0.004082
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.470	0.001404
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.473	0.019231
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.499	0.00105
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.501	0.007353
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.509	0.000866
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.533	0.009615
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.543	0.01
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.549	0.007194
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	B.1.568	0.001111
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.575.1	0.002439
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.575.2	0.004808
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.581	0.009434
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.587	0.001898
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.595	0.000261
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.597	0.00463
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.599	0.00365
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.600	0.005848
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.619	0.000871
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.619	0.000871
ORF1ab/nsp14A2-B	203	P203P	ccT	ccA	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	203	P203T	Cct	Act	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.1.622	0.012987
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	B.1.623	0.000536
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.625	0.002353
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.633	0.041667
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.1.637	0.000073
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.1.93	0.000934
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.29	0.003509
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	B.55	0.00295
ORF1ab/nsp14A2-B	203	P203P	ccT	ccC	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	B.6.3	0.026316
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	C.30	0.001727
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	N.1	0.016949
ORF1ab/nsp14A2-B	203	P203P	ccT	ccG	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	203	P203del	CCT	---	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	P.1.10	0.000269
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	P.1.16	0.000374
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	P.1.16	0.000374
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	P.1.4	0.000977
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	203	P203H	cCt	cAt	1	1	Q.1	0.000126
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	Q.4	0.000455
ORF1ab/nsp14A2-B	203	P203L	cCt	cTt	1	1	Q.4	0.000455
ORF1ab/nsp14A2-B	203	P203S	Cct	Tct	1	1	W.3	0.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.