CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 182 | V182L | V6107L | nonsyn | Gta | Tta | 3019 | 2906 | 0.96257 | 18583-18585 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2906 | 3019 | All | 0.000556 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 507 | 508 | AY.44 | 0.003086 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 382 | 382 | B.1.2 | 0.003364 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 296 | 296 | AY.43 | 0.001311 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 174 | 270 | B.1.1.7 | 0.000156 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 199 | 199 | AY.4 | 0.00031 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 124 | 125 | B.1 | 0.001136 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 115 | 115 | B.1.44 | 0.958333 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 112 | 112 | B.1.617.2 | 0.000422 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 105 | 105 | AY.117 | 0.008874 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 104 | 104 | AY.7 | 0.020384 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 65 | 65 | AY.29 | 0.001025 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 65 | 65 | AY.62 | 0.028322 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 36 | 36 | AY.33 | 0.002404 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 19 | 31 | AY.25 | 0.000114 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 31 | 31 | AY.75 | 0.001737 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 29 | 29 | AY.102 | 0.000769 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 28 | 28 | AY.9.2 | 0.001028 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 27 | 27 | AY.39 | 0.000667 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 24 | 24 | Q.3 | 0.003481 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 20 | 20 | AY.4.2 | 0.000434 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 17 | 17 | B.1.1.519 | 0.000675 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 12 | 12 | B.1.239 | 0.014652 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 10 | 10 | B.1.626 | 0.057143 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 5 | 5 | B.1.474 | 0.009506 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 2 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.543 | 0.02 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp14A2-B | 182 | V182L | Gta | Tta | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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