CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 182

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	182	V182V	V6107V	syn	gtA	gtG	3021	2932	0.97054	18583-18585
ORF1ab/nsp14A2-B	182	V182V	V6107V	syn	gtA	gtT	3021	80	0.0264813	18583-18585
ORF1ab/nsp14A2-B	182	V182V	V6107V	syn	gtA	gtC	3021	9	0.00297915	18583-18585
ORF1ab/nsp14A2-B	182	V182L	V6107L	nonsyn	Gta	Tta	3019	2906	0.96257	18583-18585
ORF1ab/nsp14A2-B	182	V182L	V6107L	nonsyn	Gta	Cta	3019	113	0.0374296	18583-18585
ORF1ab/nsp14A2-B	182	V182I	V6107I	nonsyn	Gta	Ata	2373	2372	0.999579	18583-18585
ORF1ab/nsp14A2-B	182	V182I	V6107I	nonsyn	GtA	AtT	2373	1	0.000421407	18583-18585
ORF1ab/nsp14A2-B	182	V182A	V6107A	nonsyn	gTa	gCa	113	109	0.964602	18583-18585
ORF1ab/nsp14A2-B	182	V182A	V6107A	nonsyn	gTA	gCT	113	2	0.0176991	18583-18585
ORF1ab/nsp14A2-B	182	V182A	V6107A	nonsyn	gTA	gCC	113	2	0.0176991	18583-18585
ORF1ab/nsp14A2-B	182	V182del	V6107del	del	GTA	---	41	41	1	18583-18585
ORF1ab/nsp14A2-B	182	V182del1	V6107del1	del	gtA	gt-	4	3	0.75	18583-18585
ORF1ab/nsp14A2-B	182	V182del1	V6107del1	del	Gta	-ta	4	1	0.25	18583-18585
ORF1ab/nsp14A2-B	182	V182G	V6107G	nonsyn	gTa	gGa	3	3	1	18583-18585
ORF1ab/nsp14A2-B	182	V182M	V6107M	nonsyn	GtA	AtG	3	3	1	18583-18585
ORF1ab/nsp14A2-B	182	V182R	V6107R	nonsyn	GTa	AGa	2	2	1	18583-18585
ORF1ab/nsp14A2-B	182	V182E	V6107E	nonsyn	gTa	gAa	1	1	1	18583-18585
ORF1ab/nsp14A2-B	182	V182T	V6107T	nonsyn	GTa	ACa	1	1	1	18583-18585
ORF1ab/nsp14A2-B	182	V182del2	V6107del2	del	GTa	--a	1	1	1	18583-18585
ORF1ab/nsp14A2-B	182	V182S	V6107S	nonsyn	GTa	TCa	1	1	1	18583-18585

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2932	3021	All	0.000561
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	80	3021	All	0.000015
ORF1ab/nsp14A2-B	182	V182V	gtA	gtC	9	3021	All	0.000002
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2906	3019	All	0.000556
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	113	3019	All	0.000022
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2372	2373	All	0.000454
ORF1ab/nsp14A2-B	182	V182I	GtA	AtT	1	2373	All	0
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	931	944	B.1.1.7	0.000833
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	7	944	B.1.1.7	0.000006
ORF1ab/nsp14A2-B	182	V182V	gtA	gtC	6	944	B.1.1.7	0.000005
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	507	508	AY.44	0.003086
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	1	508	AY.44	0.000006
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	443	446	AY.4	0.000689
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	2	446	AY.4	0.000003
ORF1ab/nsp14A2-B	182	V182V	gtA	gtC	1	446	AY.4	0.000002
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	382	382	B.1.2	0.003364
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	341	341	AY.4	0.000531
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	332	332	B.1.617.2	0.00125
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	296	296	AY.43	0.001311
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	174	270	B.1.1.7	0.000156
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	96	270	B.1.1.7	0.000086
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	234	234	B.1.617.2	0.000881
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	199	199	AY.4	0.00031
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	197	197	AY.44	0.001199
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	184	184	B.1.36.1	0.209806
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	153	154	B.1.1.7	0.000137
ORF1ab/nsp14A2-B	182	V182I	GtA	AtT	1	154	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	152	152	AY.43	0.000673
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	124	125	B.1	0.001136
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	1	125	B.1	0.000009
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	120	120	AY.5	0.002478
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	119	119	B.1.258.12	0.937008
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	116	116	AY.43	0.000514
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	115	115	AY.25	0.000692
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	115	115	B.1.44	0.958333
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	109	113	All	0.000021
ORF1ab/nsp14A2-B	182	V182A	gTA	gCC	2	113	All	0
ORF1ab/nsp14A2-B	182	V182A	gTA	gCT	2	113	All	0
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	112	112	B.1.617.2	0.000422
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	105	105	AY.117	0.008874
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	104	104	AY.7	0.020384
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	90	90	B.1.177.84	0.6
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	82	83	B.1.177.86	0.015043
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	83	B.1.177.86	0.000183
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	65	65	AY.29	0.001025
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	65	65	AY.62	0.028322
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	63	63	AZ.2	0.051724
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	41	56	AY.44	0.00025
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	15	56	AY.44	0.000091
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	56	56	B.1.177	0.000737
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	51	51	AY.39	0.00126
ORF1ab/nsp14A2-B	182	V182del	GTA	---	41	41	All	0.000008
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	41	41	AY.39	0.001013
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	37	37	AY.26	0.001047
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	33	37	B.1.1	0.000599
ORF1ab/nsp14A2-B	182	V182V	gtA	gtC	2	37	B.1.1	0.000036
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	2	37	B.1.1	0.000036
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	37	37	B.1.177	0.000487
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	36	36	AY.33	0.002404
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	34	34	AY.36	0.005039
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	33	34	B.1.351	0.000981
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	34	B.1.351	0.00003
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	33	33	AY.103	0.000205
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	19	31	AY.25	0.000114
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	12	31	AY.25	0.000072
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	31	31	AY.75	0.001737
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	31	31	B.1.160	0.000967
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	30	30	AY.83	0.051724
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	30	30	B.1.243	0.002088
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	30	30	P.1.4	0.029297
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	29	29	AY.102	0.000769
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	29	29	AY.3	0.000288
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	28	28	AY.9.2	0.001028
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	27	27	AY.103	0.000168
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	27	27	AY.39	0.000667
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	24	26	B.1	0.00022
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	2	26	B.1	0.000018
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	26	26	B.1.177.81	0.004922
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	23	25	P.1	0.000362
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	2	25	P.1	0.000032
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	24	24	AY.118	0.001504
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	24	24	B.1.1.7	0.000021
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	24	24	B.1.258	0.001597
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	24	24	Q.3	0.003481
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	23	23	B.1.1.317	0.009469
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	22	22	B.1.221	0.001563
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	22	22	P.1	0.000347
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	20	20	AY.20	0.000777
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	20	20	AY.4.2	0.000434
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	19	20	AY.98.1	0.00092
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	20	AY.98.1	0.000048
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	20	20	B.1.1	0.000363
ORF1ab/nsp14A2-B	182	V182del	GTA	---	20	20	B.1.1.7	0.000018
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	20	20	B.1.575	0.006068
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	19	19	AY.36	0.002816
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	19	19	AY.46.6	0.001372
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	19	19	B.1.177.44	0.00986
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	19	19	B.1.2	0.000167
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	18	18	AY.4.2	0.00039
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	18	18	B.1.2	0.000158
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	18	18	B.1.525	0.002037
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	17	17	B.1.1.519	0.000675
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	17	17	B.1.240	0.003665
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	16	16	AY.118	0.001002
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	16	16	AY.33	0.001068
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	16	16	B.1.1	0.00029
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	16	16	B.1.177.62	0.01907
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	16	16	B.1.258.17	0.001664
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	15	15	AY.102	0.000398
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	15	15	AY.117	0.001268
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	15	15	B.1.429	0.000353
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	14	14	AY.61	0.001467
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	14	14	AY.9.1	0.001172
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	14	14	P.1	0.000221
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	13	13	AY.119	0.000459
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	13	13	AY.120	0.000483
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	13	13	AY.3	0.000129
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	13	13	AY.42	0.000523
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	13	13	AY.6	0.000535
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	12	12	AY.119	0.000424
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	12	12	AY.23	0.000837
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	12	12	AY.3	0.000119
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	12	12	AY.4	0.000019
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	12	12	AY.43	0.000053
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	12	12	B.1.239	0.014652
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	11	11	AY.25	0.000066
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	11	11	AY.98.1	0.000533
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	11	11	B.1.526	0.000259
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	10	10	AY.120	0.000372
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	10	10	AY.20	0.000389
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	10	10	AY.5	0.000206
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	10	10	AY.9.1	0.000837
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	7	10	AY.92	0.002011
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	10	AY.92	0.000862
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	10	10	B.1.626	0.057143
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	9	9	AY.46.6	0.00065
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	9	9	B.1.539	0.157895
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	8	8	AY.103	0.00005
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	8	8	AY.4.2	0.000174
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	8	8	AY.41	0.002352
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	8	8	AY.46	0.000833
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	8	8	AY.89	0.039216
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	8	8	AY.9.2	0.000294
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	8	8	B.1	0.000073
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	8	8	B.1.1.519	0.000318
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	8	8	B.1.177.75	0.008325
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	8	8	B.1.499	0.008403
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	8	8	P.2	0.001493
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	7	7	AY.100	0.000322
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	7	7	AY.120	0.00026
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	6	7	AY.34	0.000582
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	7	AY.34	0.000097
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	7	7	AY.4.1	0.005162
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	7	7	AY.46.4	0.001152
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	7	7	AY.47	0.000218
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	7	7	AY.8	0.004242
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	7	7	AY.98	0.000553
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	7	7	B.1.1.70	0.002387
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	7	7	B.1.177.75	0.007284
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	7	7	B.1.526	0.000165
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	6	7	C.16	0.006363
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	7	C.16	0.00106
ORF1ab/nsp14A2-B	182	V182A	gTA	gCT	2	6		0.111111
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	2	6		0.111111
ORF1ab/nsp14A2-B	182	V182A	gTA	gCC	2	6		0.111111
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	6	6	AY.110	0.000676
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	6	6	AY.113	0.000854
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	6	6	AY.117	0.000507
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	6	6	AY.121	0.000812
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	6	6	AY.20	0.000233
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	6	6	AY.4.2	0.00013
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	6	6	AY.98	0.000474
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	6	B.1.160.16	0.004647
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	6	B.1.160.16	0.000929
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	6	6	B.1.258	0.000399
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	6	6	B.1.351	0.000178
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	6	6	C.37	0.000696
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	6	6	C.37	0.000696
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	AY.106	0.001674
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	5	5	AY.16	0.001898
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	5	5	AY.23	0.000349
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	AY.5	0.000103
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	5	5	AY.9.2	0.000184
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	5	5	AY.98.1	0.000242
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	B.1.1.153	0.005476
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	B.1.1.263	0.007788
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	5	5	B.1.160	0.000156
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	B.1.177.21	0.000382
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	5	5	B.1.36	0.00073
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	B.1.36.1	0.005701
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	5	5	B.1.474	0.009506
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	5	5	B.1.621	0.000443
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	5	5	C.36.3	0.002836
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	5	5	R.1	0.00045
ORF1ab/nsp14A2-B	182	V182del1	gtA	gt-	3	4	All	0.000001
ORF1ab/nsp14A2-B	182	V182del1	Gta	-ta	1	4	All	0
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	4	4	AY.119	0.000141
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	4	4	AY.120	0.000149
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	4	4	AY.33	0.000267
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	4	4	AY.39.1	0.000158
ORF1ab/nsp14A2-B	182	V182del	GTA	---	4	4	AY.4	0.000006
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	4	4	AY.45	0.000487
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	4	4	AY.75.1	0.000721
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	4	4	B.1.1.385	0.017857
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	4	4	B.1.351	0.000119
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	4	4	B.1.438.1	0.000429
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	4	4	B.1.617.1	0.000516
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	4	4	Q.4	0.001819
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	A.23.1	0.002113
ORF1ab/nsp14A2-B	182	V182M	GtA	AtG	3	3	All	0.000001
ORF1ab/nsp14A2-B	182	V182G	gTa	gGa	3	3	All	0.000001
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	AY.100	0.000138
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	AY.102	0.00008
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	AY.106	0.001005
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	AY.23	0.000209
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	3	3	AY.44	0.000018
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	3	AY.46.4	0.000329
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	3	AY.46.4	0.000165
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	AY.46.5	0.000595
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	AY.46.6	0.000217
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	AY.47	0.000093
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	AY.68	0.000821
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	AY.75	0.000168
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.1.170	0.003741
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.1.189	0.004539
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	B.1.1.263	0.004673
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.1.318	0.000905
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	B.1.1.434	0.001046
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.1.519	0.000119
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.1.523	0.004687
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	B.1.160	0.000094
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.177.60	0.000655
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	3	B.1.177.83	0.002963
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	3	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	B.1.221	0.000213
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	B.1.234	0.000396
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.239	0.003663
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	B.1.243	0.000209
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	B.1.243	0.000209
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.258.14	0.002941
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	B.1.36.29	0.001552
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	B.1.398	0.008929
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	B.1.517	0.001281
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	B.1.596	0.000261
ORF1ab/nsp14A2-B	182	V182del	GTA	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	B.1.637	0.000219
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	C.35	0.002322
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	P.1.1	0.000953
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	3	3	P.1.4	0.00293
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	3	3	P.1.7	0.000958
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	3	3	Q.1	0.000379
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	A.2	0.001324
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AA.1	0.014493
ORF1ab/nsp14A2-B	182	V182R	GTa	AGa	2	2	All	0
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.1	0.000791
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.101	0.000981
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.113	0.000285
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.113	0.000285
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.114	0.000462
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.121	0.000271
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.27	0.000129
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.3.1	0.000171
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	2	2	AY.33	0.000134
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.35	0.000466
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.38	0.000999
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.39.1	0.000079
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.4.4	0.000818
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	2	AY.4.5	0.000107
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	1	2	AY.4.5	0.000107
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.42	0.00008
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.46.2	0.001271
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.49	0.00639
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.53	0.000575
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.61	0.00021
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.66	0.002139
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.68	0.000547
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.7.1	0.000225
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.7.2	0.001119
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.70	0.000417
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.72	0.002721
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.73	0.001331
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.84	0.000875
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.84	0.000875
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.87	0.001665
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	AY.9	0.000135
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	AY.9	0.000135
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	AY.98	0.000158
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.1.10	0.00223
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.1.170	0.002494
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	B.1.1.216	0.001781
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.1.241	0.004141
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.1.297	0.004474
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.1.317	0.000823
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.177.52	0.003515
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.177.81	0.000379
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.221	0.000142
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.234	0.000264
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.236	0.004107
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.258.3	0.00335
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.280	0.014286
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.36.31	0.003503
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.400	0.000858
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	B.1.427	0.000101
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.543	0.02
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	B.1.617.1	0.000258
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	B.1.621	0.000177
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	B.1.621	0.000177
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	2	2	C.35	0.001548
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	2	2	C.36.3	0.001134
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	2	2	P.1.10	0.000539
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1		0.055556
ORF1ab/nsp14A2-B	182	V182G	gTa	gGa	1	1		0.055556
ORF1ab/nsp14A2-B	182	V182R	GTa	AGa	1	1		0.055556
ORF1ab/nsp14A2-B	182	V182E	gTa	gAa	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	A.2.5	0.000499
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	A.23.1	0.000704
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	A.27	0.001656
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	A.29	0.005319
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	182	V182S	GTa	TCa	1	1	All	0
ORF1ab/nsp14A2-B	182	V182E	gTa	gAa	1	1	All	0
ORF1ab/nsp14A2-B	182	V182del2	GTa	--a	1	1	All	0
ORF1ab/nsp14A2-B	182	V182T	GTa	ACa	1	1	All	0
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AT.1	0.005128
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.10	0.00053
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.111	0.000183
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.13	0.000161
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.15	0.002222
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.16	0.00038
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.24	0.000431
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.29.1	0.000221
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.3.1	0.000085
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.32	0.000532
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.37	0.000316
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	182	V182del1	gtA	gt-	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.4.3	0.000842
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.41	0.000294
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.46.3	0.000934
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.46.3	0.000934
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.49	0.003195
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.5.2	0.002463
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.54	0.000095
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.65	0.000533
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.65	0.000533
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.7.1	0.000113
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	182	V182M	GtA	AtG	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.74	0.000116
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.75	0.000056
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.8	0.000606
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	AY.82	0.001357
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.99.1	0.001553
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B	0.000128
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B	0.000128
ORF1ab/nsp14A2-B	182	V182S	GTa	TCa	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	182	V182G	gTa	gGa	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	182	V182del1	Gta	-ta	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	182	V182R	GTa	AGa	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.216	0.00089
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.258	0.003257
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.289	0.002083
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.300	0.010753
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.312	0.001912
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.33	0.000421
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.337	0.003597
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	1	B.1.1.375	0.011905
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.39	0.00051
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.412	0.007634
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.428	0.009434
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.448	0.002033
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.1.50	0.000679
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.524	0.020833
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.58	0.005376
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	182	V182del1	gtA	gt-	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.1.83	0.00271
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.139	0.000733
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.160.15	0.00495
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.160.30	0.002976
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.160.7	0.002079
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	182	V182del1	gtA	gt-	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.177.11	0.001698
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.177.50	0.004695
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.177.52	0.001757
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.177.58	0.001332
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.177.60	0.000218
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.177.7	0.000165
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.177.73	0.000566
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.177.77	0.000726
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.177.79	0.002342
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.179	0.003759
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.190	0.01
ORF1ab/nsp14A2-B	182	V182M	GtA	AtG	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	182	V182del2	GTa	--a	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.218	0.005155
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.22	0.001318
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.232	0.000537
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.241	0.000812
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.279	0.000514
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.340	0.004292
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.36.10	0.004785
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.395	0.007042
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.405	0.012346
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	1	1	B.1.426	0.001009
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.428	0.00102
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.441	0.009615
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.443	0.004673
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.468	0.005714
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.470	0.001404
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.471	0.002732
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.498	0.020408
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.509	0.000866
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.530	0.007143
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.560	0.00463
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.564	0.000426
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	182	V182G	gTa	gGa	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	1	B.1.612	0.002653
ORF1ab/nsp14A2-B	182	V182T	GTa	ACa	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	182	V182M	GtA	AtG	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.1.620	0.000946
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.628	0.000352
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.15	0.017544
ORF1ab/nsp14A2-B	182	V182L	Gta	Cta	1	1	B.31	0.003731
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	B.46	0.020833
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	C.1.2	0.004255
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	182	V182del	GTA	---	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	182	V182V	gtA	gtT	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	D.2	0.000075
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	N.1	0.016949
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	P.1.16	0.000374
ORF1ab/nsp14A2-B	182	V182I	Gta	Ata	1	1	P.2	0.000187
ORF1ab/nsp14A2-B	182	V182V	gtA	gtG	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	182	V182A	gTa	gCa	1	1	Q.8	0.000165
ORF1ab/nsp14A2-B	182	V182L	Gta	Tta	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.