CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 179

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B179D179DD6104DsyngaCgaT23942394118574-18576
ORF1ab/nsp14A2-B179D179ND6104NnonsynGacAac109109118574-18576
ORF1ab/nsp14A2-B179D179GD6104GnonsyngAcgGc9696118574-18576
ORF1ab/nsp14A2-B179D179delD6104deldelGAC---4040118574-18576
ORF1ab/nsp14A2-B179D179AD6104AnonsyngAcgCc3030118574-18576
ORF1ab/nsp14A2-B179D179ED6104EnonsyngaCgaA25180.7218574-18576
ORF1ab/nsp14A2-B179D179ED6104EnonsyngaCgaG2570.2818574-18576
ORF1ab/nsp14A2-B179D179YD6104YnonsynGacTac2020118574-18576
ORF1ab/nsp14A2-B179D179VD6104VnonsyngAcgTc77118574-18576
ORF1ab/nsp14A2-B179D179SD6104SnonsynGAcTCc11118574-18576
ORF1ab/nsp14A2-B179D179XD6104XnonsynGaCTaA11118574-18576
ORF1ab/nsp14A2-B179D179ID6104InonsynGACATT11118574-18576
ORF1ab/nsp14A2-B179D179HD6104HnonsynGacCac11118574-18576
ORF1ab/nsp14A2-B179D179del2D6104del2delGAc--c11118574-18576

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B179D179DgaCgaT23942394All0.000458
ORF1ab/nsp14A2-B179D179DgaCgaT10711071B.1.1.70.000959
ORF1ab/nsp14A2-B179D179DgaCgaT177177S.10.876238
ORF1ab/nsp14A2-B179D179DgaCgaT150150B.1.617.20.000565
ORF1ab/nsp14A2-B179D179DgaCgaT138138AY.470.004293
ORF1ab/nsp14A2-B179D179DgaCgaT110110AY.40.000171
ORF1ab/nsp14A2-B179D179NGacAac109109All0.000021
ORF1ab/nsp14A2-B179D179GgAcgGc9696All0.000018
ORF1ab/nsp14A2-B179D179DgaCgaT7676AY.1000.003497
ORF1ab/nsp14A2-B179D179DgaCgaT6363B.1.20.000555
ORF1ab/nsp14A2-B179D179DgaCgaT5252P.20.009705
ORF1ab/nsp14A2-B179D179DgaCgaT4646AY.30.000458
ORF1ab/nsp14A2-B179D179DgaCgaT4444B.1.360.00642
ORF1ab/nsp14A2-B179D179DgaCgaT4444B.1.621.10.022256
ORF1ab/nsp14A2-B179D179delGAC---4040All0.000008
ORF1ab/nsp14A2-B179D179DgaCgaT3838AY.250.000229
ORF1ab/nsp14A2-B179D179DgaCgaT3434AY.440.000207
ORF1ab/nsp14A2-B179D179DgaCgaT3131P.10.000488
ORF1ab/nsp14A2-B179D179AgAcgCc3030All0.000006
ORF1ab/nsp14A2-B179D179DgaCgaT3030B.10.000275
ORF1ab/nsp14A2-B179D179EgaCgaA1825All0.000003
ORF1ab/nsp14A2-B179D179EgaCgaG725All0.000001
ORF1ab/nsp14A2-B179D179DgaCgaT2525AY.200.000972
ORF1ab/nsp14A2-B179D179GgAcgGc2424AY.410.007055
ORF1ab/nsp14A2-B179D179YGacTac2020All0.000004
ORF1ab/nsp14A2-B179D179DgaCgaT2020AY.360.002964
ORF1ab/nsp14A2-B179D179delGAC---1919B.1.1.70.000017
ORF1ab/nsp14A2-B179D179NGacAac1919B.1.1.70.000017
ORF1ab/nsp14A2-B179D179AgAcgCc1717B.1.20.00015
ORF1ab/nsp14A2-B179D179GgAcgGc1616AY.5.30.005398
ORF1ab/nsp14A2-B179D179GgAcgGc1616B.1.1.70.000014
ORF1ab/nsp14A2-B179D179DgaCgaT1616B.1.1600.000499
ORF1ab/nsp14A2-B179D179NGacAac1313B.10.000119
ORF1ab/nsp14A2-B179D179EgaCgaA1112AY.440.000067
ORF1ab/nsp14A2-B179D179EgaCgaG112AY.440.000006
ORF1ab/nsp14A2-B179D179NGacAac1111AY.430.000049
ORF1ab/nsp14A2-B179D179DgaCgaT1111B.1.10.0002
ORF1ab/nsp14A2-B179D179DgaCgaT1010B.1.5260.000235
ORF1ab/nsp14A2-B179D179NGacAac1010B.1.617.20.000038
ORF1ab/nsp14A2-B179D179DgaCgaT99AY.430.00004
ORF1ab/nsp14A2-B179D179DgaCgaT99B.1.1770.000119
ORF1ab/nsp14A2-B179D179DgaCgaT99B.1.2410.007305
ORF1ab/nsp14A2-B179D179DgaCgaT99B.1.2430.000626
ORF1ab/nsp14A2-B179D179DgaCgaT88B.1.2580.000532
ORF1ab/nsp14A2-B179D179GgAcgGc88B.1.617.20.00003
ORF1ab/nsp14A2-B179D179DgaCgaT88P.30.012759
ORF1ab/nsp14A2-B179D179VgAcgTc77All0.000001
ORF1ab/nsp14A2-B179D179GgAcgGc66AY.40.000009
ORF1ab/nsp14A2-B179D179DgaCgaT66AY.610.000629
ORF1ab/nsp14A2-B179D179NGacAac66AY.980.000474
ORF1ab/nsp14A2-B179D179NGacAac66B.1.10.000109
ORF1ab/nsp14A2-B179D179NGacAac66B.1.20.000053
ORF1ab/nsp14A2-B179D179DgaCgaT55AY.1170.000423
ORF1ab/nsp14A2-B179D179AgAcgCc55AY.340.000485
ORF1ab/nsp14A2-B179D179NGacAac55AY.40.000008
ORF1ab/nsp14A2-B179D179DgaCgaT55AY.4.20.000108
ORF1ab/nsp14A2-B179D179NGacAac55P.10.000079
ORF1ab/nsp14A2-B179D179YGacTac440.222222
ORF1ab/nsp14A2-B179D179DgaCgaT44AY.1020.000106
ORF1ab/nsp14A2-B179D179NGacAac44AY.250.000024
ORF1ab/nsp14A2-B179D179DgaCgaT44AY.330.000267
ORF1ab/nsp14A2-B179D179delGAC---44AY.40.000006
ORF1ab/nsp14A2-B179D179YGacTac44AY.430.000018
ORF1ab/nsp14A2-B179D179DgaCgaT44AY.46.40.000658
ORF1ab/nsp14A2-B179D179DgaCgaT44AY.50.000083
ORF1ab/nsp14A2-B179D179DgaCgaT44AY.70.000784
ORF1ab/nsp14A2-B179D179DgaCgaT44B.1.3510.000119
ORF1ab/nsp14A2-B179D179DgaCgaT44B.1.4270.000202
ORF1ab/nsp14A2-B179D179DgaCgaT44B.1.4620.028986
ORF1ab/nsp14A2-B179D179DgaCgaT44P.1.150.000929
ORF1ab/nsp14A2-B179D179DgaCgaT33A.2.50.001497
ORF1ab/nsp14A2-B179D179DgaCgaT33AG.10.2
ORF1ab/nsp14A2-B179D179DgaCgaT33AY.120.10.000963
ORF1ab/nsp14A2-B179D179NGacAac33AY.4.20.000065
ORF1ab/nsp14A2-B179D179DgaCgaT33AY.420.000121
ORF1ab/nsp14A2-B179D179DgaCgaT33AY.980.000237
ORF1ab/nsp14A2-B179D179DgaCgaT33AY.98.10.000145
ORF1ab/nsp14A2-B179D179GgAcgGc33AY.98.10.000145
ORF1ab/nsp14A2-B179D179DgaCgaT33AY.99.20.000276
ORF1ab/nsp14A2-B179D179GgAcgGc33B.10.000027
ORF1ab/nsp14A2-B179D179AgAcgCc33B.10.000027
ORF1ab/nsp14A2-B179D179VgAcgTc33B.1.1.70.000003
ORF1ab/nsp14A2-B179D179DgaCgaT33B.1.1.700.001023
ORF1ab/nsp14A2-B179D179NGacAac33B.1.3980.008929
ORF1ab/nsp14A2-B179D179delGAC---33B.1.617.20.000011
ORF1ab/nsp14A2-B179D179EgaCgaA220.111111
ORF1ab/nsp14A2-B179D179AgAcgCc22AY.1030.000012
ORF1ab/nsp14A2-B179D179GgAcgGc22AY.200.000078
ORF1ab/nsp14A2-B179D179EgaCgaA22AY.260.000057
ORF1ab/nsp14A2-B179D179DgaCgaT22AY.290.000032
ORF1ab/nsp14A2-B179D179EgaCgaG22AY.390.000049
ORF1ab/nsp14A2-B179D179DgaCgaT22AY.390.000049
ORF1ab/nsp14A2-B179D179YGacTac22AY.40.000003
ORF1ab/nsp14A2-B179D179GgAcgGc22AY.430.000009
ORF1ab/nsp14A2-B179D179GgAcgGc22AY.440.000012
ORF1ab/nsp14A2-B179D179DgaCgaT22AY.450.000243
ORF1ab/nsp14A2-B179D179DgaCgaT22AY.60.000082
ORF1ab/nsp14A2-B179D179DgaCgaT22B.1.1.2160.001781
ORF1ab/nsp14A2-B179D179GgAcgGc22B.1.1770.000026
ORF1ab/nsp14A2-B179D179DgaCgaT22B.1.177.210.000153
ORF1ab/nsp14A2-B179D179DgaCgaT22B.1.3200.002491
ORF1ab/nsp14A2-B179D179DgaCgaT22B.1.4290.000047
ORF1ab/nsp14A2-B179D179DgaCgaT22B.1.5820.000981
ORF1ab/nsp14A2-B179D179YGacTac22B.1.617.20.000008
ORF1ab/nsp14A2-B179D179DgaCgaT22B.1.6210.000177
ORF1ab/nsp14A2-B179D179NGacAac22B.1.6370.000146
ORF1ab/nsp14A2-B179D179DgaCgaT22P.1.70.000639
ORF1ab/nsp14A2-B179D179DgaCgaT22Q.80.00033
ORF1ab/nsp14A2-B179D179SGAcTCc110.055556
ORF1ab/nsp14A2-B179D179AgAcgCc110.055556
ORF1ab/nsp14A2-B179D179XGaCTaA110.055556
ORF1ab/nsp14A2-B179D179DgaCgaT11A.50.001923
ORF1ab/nsp14A2-B179D179delGAC---11AD.20.000219
ORF1ab/nsp14A2-B179D179del2GAc--c11All0
ORF1ab/nsp14A2-B179D179SGAcTCc11All0
ORF1ab/nsp14A2-B179D179XGaCTaA11All0
ORF1ab/nsp14A2-B179D179IGACATT11All0
ORF1ab/nsp14A2-B179D179HGacCac11All0
ORF1ab/nsp14A2-B179D179YGacTac11AY.1000.000046
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.1030.000006
ORF1ab/nsp14A2-B179D179NGacAac11AY.1170.000085
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.1180.000063
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.1190.000035
ORF1ab/nsp14A2-B179D179AgAcgCc11AY.1190.000035
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.120.000316
ORF1ab/nsp14A2-B179D179delGAC---11AY.1200.000037
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.190.00114
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.20.000356
ORF1ab/nsp14A2-B179D179NGacAac11AY.230.00007
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.230.00007
ORF1ab/nsp14A2-B179D179delGAC---11AY.250.000006
ORF1ab/nsp14A2-B179D179EgaCgaG11AY.250.000006
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.260.000028
ORF1ab/nsp14A2-B179D179NGacAac11AY.260.000028
ORF1ab/nsp14A2-B179D179NGacAac11AY.340.000097
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.350.000233
ORF1ab/nsp14A2-B179D179GgAcgGc11AY.4.20.000022
ORF1ab/nsp14A2-B179D179delGAC---11AY.4.50.000107
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.4.50.000107
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.400.000964
ORF1ab/nsp14A2-B179D179NGacAac11AY.440.000006
ORF1ab/nsp14A2-B179D179delGAC---11AY.46.60.000072
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.46.60.000072
ORF1ab/nsp14A2-B179D179NGacAac11AY.470.000031
ORF1ab/nsp14A2-B179D179GgAcgGc11AY.50.000021
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.520.000814
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.590.00053
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.670.000464
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.690.000187
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.700.000209
ORF1ab/nsp14A2-B179D179del2GAc--c11AY.730.000665
ORF1ab/nsp14A2-B179D179VgAcgTc11AY.770.001127
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.850.000427
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.9.20.000037
ORF1ab/nsp14A2-B179D179GgAcgGc11AY.920.000287
ORF1ab/nsp14A2-B179D179DgaCgaT11AY.920.000287
ORF1ab/nsp14A2-B179D179delGAC---11B.10.000009
ORF1ab/nsp14A2-B179D179HGacCac11B.1.10.000018
ORF1ab/nsp14A2-B179D179EgaCgaA11B.1.10.000018
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.10.000327
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.1700.001247
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.1980.001468
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.2140.000055
ORF1ab/nsp14A2-B179D179EgaCgaG11B.1.1.2170.003636
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.2170.003636
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.2610.008621
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.280.000311
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp14A2-B179D179delGAC---11B.1.1.3110.000358
ORF1ab/nsp14A2-B179D179NGacAac11B.1.1.3160.000925
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.1.3180.000302
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.370.000193
ORF1ab/nsp14A2-B179D179EgaCgaG11B.1.1.3760.005952
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp14A2-B179D179YGacTac11B.1.1.5190.00004
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.1.5190.00004
ORF1ab/nsp14A2-B179D179NGacAac11B.1.1.630.000386
ORF1ab/nsp14A2-B179D179AgAcgCc11B.1.1.70.000001
ORF1ab/nsp14A2-B179D179YGacTac11B.1.1.70.000001
ORF1ab/nsp14A2-B179D179EgaCgaA11B.1.1.70.000001
ORF1ab/nsp14A2-B179D179NGacAac11B.1.1.700.000341
ORF1ab/nsp14A2-B179D179NGacAac11B.1.1600.000031
ORF1ab/nsp14A2-B179D179YGacTac11B.1.1770.000013
ORF1ab/nsp14A2-B179D179delGAC---11B.1.1770.000013
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.177.160.000664
ORF1ab/nsp14A2-B179D179delGAC---11B.1.177.180.00116
ORF1ab/nsp14A2-B179D179delGAC---11B.1.177.540.000606
ORF1ab/nsp14A2-B179D179delGAC---11B.1.177.810.000189
ORF1ab/nsp14A2-B179D179YGacTac11B.1.20.000009
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.20.000009
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.2060.000816
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.2100.002132
ORF1ab/nsp14A2-B179D179NGacAac11B.1.2210.000071
ORF1ab/nsp14A2-B179D179NGacAac11B.1.2310.032258
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.2340.000132
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.2400.000216
ORF1ab/nsp14A2-B179D179YGacTac11B.1.2430.00007
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.258.110.000396
ORF1ab/nsp14A2-B179D179EgaCgaA11B.1.258.110.000396
ORF1ab/nsp14A2-B179D179YGacTac11B.1.258.140.00098
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.2650.001271
ORF1ab/nsp14A2-B179D179delGAC---11B.1.3510.00003
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.3510.00003
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.36.170.000494
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.36.290.000517
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.4040.001302
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.4110.003704
ORF1ab/nsp14A2-B179D179VgAcgTc11B.1.4270.00005
ORF1ab/nsp14A2-B179D179NGacAac11B.1.4290.000024
ORF1ab/nsp14A2-B179D179NGacAac11B.1.438.10.000107
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.4410.009615
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.4510.008197
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.4620.007246
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.4650.003802
ORF1ab/nsp14A2-B179D179GgAcgGc11B.1.466.20.000391
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.4680.005714
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.5030.002488
ORF1ab/nsp14A2-B179D179NGacAac11B.1.5150.014493
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.5640.000426
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.5800.004065
ORF1ab/nsp14A2-B179D179NGacAac11B.1.5900.004545
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.5960.000087
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.5990.00365
ORF1ab/nsp14A2-B179D179DgaCgaT11B.1.617.10.000129
ORF1ab/nsp14A2-B179D179IGACATT11B.1.617.10.000129
ORF1ab/nsp14A2-B179D179EgaCgaG11B.1.617.20.000004
ORF1ab/nsp14A2-B179D179VgAcgTc11B.1.617.20.000004
ORF1ab/nsp14A2-B179D179delGAC---11B.1.6300.005236
ORF1ab/nsp14A2-B179D179VgAcgTc11B.460.020833
ORF1ab/nsp14A2-B179D179YGacTac11B.60.00091
ORF1ab/nsp14A2-B179D179DgaCgaT11B.6.60.000889
ORF1ab/nsp14A2-B179D179DgaCgaT11C.110.010638
ORF1ab/nsp14A2-B179D179delGAC---11C.360.000911
ORF1ab/nsp14A2-B179D179DgaCgaT11C.360.000911
ORF1ab/nsp14A2-B179D179DgaCgaT11C.80.004464
ORF1ab/nsp14A2-B179D179DgaCgaT11N.50.001767
ORF1ab/nsp14A2-B179D179DgaCgaT11P.1.170.000162
ORF1ab/nsp14A2-B179D179DgaCgaT11Q.30.000145