CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 179

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	179	D179D	D6104D	syn	gaC	gaT	2394	2394	1	18574-18576
ORF1ab/nsp14A2-B	179	D179N	D6104N	nonsyn	Gac	Aac	109	109	1	18574-18576
ORF1ab/nsp14A2-B	179	D179G	D6104G	nonsyn	gAc	gGc	96	96	1	18574-18576
ORF1ab/nsp14A2-B	179	D179del	D6104del	del	GAC	---	40	40	1	18574-18576
ORF1ab/nsp14A2-B	179	D179A	D6104A	nonsyn	gAc	gCc	30	30	1	18574-18576
ORF1ab/nsp14A2-B	179	D179E	D6104E	nonsyn	gaC	gaA	25	18	0.72	18574-18576
ORF1ab/nsp14A2-B	179	D179E	D6104E	nonsyn	gaC	gaG	25	7	0.28	18574-18576
ORF1ab/nsp14A2-B	179	D179Y	D6104Y	nonsyn	Gac	Tac	20	20	1	18574-18576
ORF1ab/nsp14A2-B	179	D179V	D6104V	nonsyn	gAc	gTc	7	7	1	18574-18576
ORF1ab/nsp14A2-B	179	D179S	D6104S	nonsyn	GAc	TCc	1	1	1	18574-18576
ORF1ab/nsp14A2-B	179	D179X	D6104X	nonsyn	GaC	TaA	1	1	1	18574-18576
ORF1ab/nsp14A2-B	179	D179I	D6104I	nonsyn	GAC	ATT	1	1	1	18574-18576
ORF1ab/nsp14A2-B	179	D179H	D6104H	nonsyn	Gac	Cac	1	1	1	18574-18576
ORF1ab/nsp14A2-B	179	D179del2	D6104del2	del	GAc	--c	1	1	1	18574-18576

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2394	2394	All	0.000458
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1071	1071	B.1.1.7	0.000959
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	177	177	S.1	0.876238
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	150	150	B.1.617.2	0.000565
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	138	138	AY.47	0.004293
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	110	110	AY.4	0.000171
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	109	109	All	0.000021
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	96	96	All	0.000018
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	76	76	AY.100	0.003497
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	63	63	B.1.2	0.000555
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	52	52	P.2	0.009705
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	46	46	AY.3	0.000458
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	44	44	B.1.36	0.00642
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	44	44	B.1.621.1	0.022256
ORF1ab/nsp14A2-B	179	D179del	GAC	---	40	40	All	0.000008
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	38	38	AY.25	0.000229
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	34	34	AY.44	0.000207
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	31	31	P.1	0.000488
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	30	30	All	0.000006
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	30	30	B.1	0.000275
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	18	25	All	0.000003
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	7	25	All	0.000001
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	25	25	AY.20	0.000972
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	24	24	AY.41	0.007055
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	20	20	All	0.000004
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	20	20	AY.36	0.002964
ORF1ab/nsp14A2-B	179	D179del	GAC	---	19	19	B.1.1.7	0.000017
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	19	19	B.1.1.7	0.000017
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	17	17	B.1.2	0.00015
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	16	16	AY.5.3	0.005398
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	16	16	B.1.1.7	0.000014
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	16	16	B.1.160	0.000499
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	13	13	B.1	0.000119
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	11	12	AY.44	0.000067
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	1	12	AY.44	0.000006
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	11	11	AY.43	0.000049
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	11	11	B.1.1	0.0002
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	10	10	B.1.526	0.000235
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	10	10	B.1.617.2	0.000038
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	9	9	AY.43	0.00004
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	9	9	B.1.177	0.000119
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	9	9	B.1.241	0.007305
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	9	9	B.1.243	0.000626
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	8	8	B.1.258	0.000532
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	8	8	B.1.617.2	0.00003
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	8	8	P.3	0.012759
ORF1ab/nsp14A2-B	179	D179V	gAc	gTc	7	7	All	0.000001
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	6	6	AY.4	0.000009
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	6	6	AY.61	0.000629
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	6	6	AY.98	0.000474
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	6	6	B.1.1	0.000109
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	6	6	B.1.2	0.000053
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	5	5	AY.117	0.000423
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	5	5	AY.34	0.000485
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	5	5	AY.4	0.000008
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	5	5	AY.4.2	0.000108
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	5	5	P.1	0.000079
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	4	4		0.222222
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	AY.102	0.000106
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	4	4	AY.25	0.000024
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	AY.33	0.000267
ORF1ab/nsp14A2-B	179	D179del	GAC	---	4	4	AY.4	0.000006
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	4	4	AY.43	0.000018
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	AY.46.4	0.000658
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	AY.5	0.000083
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	AY.7	0.000784
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	B.1.351	0.000119
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	B.1.427	0.000202
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	B.1.462	0.028986
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	4	4	P.1.15	0.000929
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	A.2.5	0.001497
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	AG.1	0.2
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	AY.120.1	0.000963
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	3	3	AY.4.2	0.000065
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	AY.42	0.000121
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	AY.98	0.000237
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	AY.98.1	0.000145
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	3	3	AY.98.1	0.000145
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	AY.99.2	0.000276
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	179	D179V	gAc	gTc	3	3	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	3	3	B.1.1.70	0.001023
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	3	3	B.1.398	0.008929
ORF1ab/nsp14A2-B	179	D179del	GAC	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	2	2		0.111111
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	2	2	AY.103	0.000012
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	2	2	AY.20	0.000078
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	2	2	AY.26	0.000057
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	AY.29	0.000032
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	2	2	AY.4	0.000003
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	2	2	AY.43	0.000009
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	AY.45	0.000243
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	B.1.1.216	0.001781
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	B.1.177.21	0.000153
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	B.1.320	0.002491
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	B.1.582	0.000981
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	B.1.621	0.000177
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	2	2	B.1.637	0.000146
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	P.1.7	0.000639
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	2	2	Q.8	0.00033
ORF1ab/nsp14A2-B	179	D179S	GAc	TCc	1	1		0.055556
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	1	1		0.055556
ORF1ab/nsp14A2-B	179	D179X	GaC	TaA	1	1		0.055556
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	A.5	0.001923
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	179	D179del2	GAc	--c	1	1	All	0
ORF1ab/nsp14A2-B	179	D179S	GAc	TCc	1	1	All	0
ORF1ab/nsp14A2-B	179	D179X	GaC	TaA	1	1	All	0
ORF1ab/nsp14A2-B	179	D179I	GAC	ATT	1	1	All	0
ORF1ab/nsp14A2-B	179	D179H	Gac	Cac	1	1	All	0
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.103	0.000006
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	AY.117	0.000085
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.2	0.000356
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.46.6	0.000072
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.52	0.000814
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.69	0.000187
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	179	D179del2	GAc	--c	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	179	D179V	gAc	gTc	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.85	0.000427
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	179	D179H	Gac	Cac	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.170	0.001247
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.198	0.001468
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.214	0.000055
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	1	1	B.1.1.217	0.003636
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.217	0.003636
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.261	0.008621
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.28	0.000311
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.1.316	0.000925
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.1.318	0.000302
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.37	0.000193
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	1	1	B.1.1.376	0.005952
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.1.434	0.000349
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	179	D179A	gAc	gCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.160	0.000031
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.206	0.000816
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.210	0.002132
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.231	0.032258
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.1.243	0.00007
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	179	D179E	gaC	gaA	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.1.258.14	0.00098
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.265	0.001271
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.36.17	0.000494
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.404	0.001302
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.411	0.003704
ORF1ab/nsp14A2-B	179	D179V	gAc	gTc	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.441	0.009615
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.451	0.008197
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.462	0.007246
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.465	0.003802
ORF1ab/nsp14A2-B	179	D179G	gAc	gGc	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.468	0.005714
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.503	0.002488
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.515	0.014493
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.564	0.000426
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.580	0.004065
ORF1ab/nsp14A2-B	179	D179N	Gac	Aac	1	1	B.1.590	0.004545
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.599	0.00365
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	179	D179I	GAC	ATT	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	179	D179E	gaC	gaG	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	179	D179V	gAc	gTc	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	B.1.630	0.005236
ORF1ab/nsp14A2-B	179	D179V	gAc	gTc	1	1	B.46	0.020833
ORF1ab/nsp14A2-B	179	D179Y	Gac	Tac	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	C.11	0.010638
ORF1ab/nsp14A2-B	179	D179del	GAC	---	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	C.36	0.000911
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	C.8	0.004464
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	N.5	0.001767
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	179	D179D	gaC	gaT	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.