CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 16

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	16	T16I	T5941I	nonsyn	aCt	aTt	48903	48902	0.99998	18085-18087
ORF1ab/nsp14A2-B	16	T16I	T5941I	nonsyn	aCT	aTC	48903	1	0.0000204486	18085-18087
ORF1ab/nsp14A2-B	16	T16T	T5941T	syn	acT	acG	1349	805	0.596738	18085-18087
ORF1ab/nsp14A2-B	16	T16T	T5941T	syn	acT	acC	1349	465	0.3447	18085-18087
ORF1ab/nsp14A2-B	16	T16T	T5941T	syn	acT	acA	1349	79	0.0585619	18085-18087
ORF1ab/nsp14A2-B	16	T16N	T5941N	nonsyn	aCt	aAt	159	155	0.974843	18085-18087
ORF1ab/nsp14A2-B	16	T16N	T5941N	nonsyn	aCT	aAC	159	4	0.0251572	18085-18087
ORF1ab/nsp14A2-B	16	T16A	T5941A	nonsyn	Act	Gct	125	125	1	18085-18087
ORF1ab/nsp14A2-B	16	T16del	T5941del	del	ACT	---	24	24	1	18085-18087
ORF1ab/nsp14A2-B	16	T16S	T5941S	nonsyn	aCt	aGt	16	9	0.5625	18085-18087
ORF1ab/nsp14A2-B	16	T16S	T5941S	nonsyn	Act	Tct	16	7	0.4375	18085-18087
ORF1ab/nsp14A2-B	16	T16P	T5941P	nonsyn	Act	Cct	9	8	0.888889	18085-18087
ORF1ab/nsp14A2-B	16	T16P	T5941P	nonsyn	AcT	CcC	9	1	0.111111	18085-18087
ORF1ab/nsp14A2-B	16	T16R	T5941R	nonsyn	aCT	aGA	3	3	1	18085-18087
ORF1ab/nsp14A2-B	16	T16V	T5941V	nonsyn	ACt	GTt	2	2	1	18085-18087
ORF1ab/nsp14A2-B	16	T16H	T5941H	nonsyn	ACT	CAC	2	1	0.5	18085-18087
ORF1ab/nsp14A2-B	16	T16H	T5941H	nonsyn	ACt	CAt	2	1	0.5	18085-18087
ORF1ab/nsp14A2-B	16	T16del1	T5941del1	del	Act	-ct	1	1	1	18085-18087

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	48902	48903	All	0.009353
ORF1ab/nsp14A2-B	16	T16I	aCT	aTC	1	48903	All	0
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	23350	23350	AY.9.2	0.857636
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	11867	11867	AY.9.1	0.993553
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3992	3992	B.1.1.7	0.003574
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1794	1794	AY.43	0.007948
ORF1ab/nsp14A2-B	16	T16T	acT	acG	805	1349	All	0.000154
ORF1ab/nsp14A2-B	16	T16T	acT	acC	465	1349	All	0.000089
ORF1ab/nsp14A2-B	16	T16T	acT	acA	79	1349	All	0.000015
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1300	1300	AY.4	0.002023
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1011	1011	AY.9	0.068339
ORF1ab/nsp14A2-B	16	T16T	acT	acG	738	772	AY.4	0.001149
ORF1ab/nsp14A2-B	16	T16T	acT	acC	19	772	AY.4	0.00003
ORF1ab/nsp14A2-B	16	T16T	acT	acA	15	772	AY.4	0.000023
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	504	504	AY.9.2.1	0.996047
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	488	488	B.1.617.2	0.001838
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	391	391	B.1.177	0.005149
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	285	285	AY.25	0.001714
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	282	282	AY.44	0.001716
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	240	240	AY.54	0.022883
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	203	203	B.1.429	0.004776
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	163	163	AY.103	0.001012
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	155	159	All	0.00003
ORF1ab/nsp14A2-B	16	T16N	aCT	aAC	4	159	All	0.000001
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	136	136	B.1	0.001246
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	127	127	AY.5	0.002622
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	125	125	All	0.000024
ORF1ab/nsp14A2-B	16	T16T	acT	acC	119	122	AY.5	0.002457
ORF1ab/nsp14A2-B	16	T16T	acT	acG	3	122	AY.5	0.000062
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	119	119	B.1.1.519	0.004726
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	115	116	B.1.2	0.001013
ORF1ab/nsp14A2-B	16	T16I	aCT	aTC	1	116	B.1.2	0.000009
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	103	103	AY.102	0.002731
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	90	90	AY.120	0.003346
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	85	85	B.1.1	0.001542
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	82	82	B.1.1.158	1
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	81	81	P.1	0.001276
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	73	73	B.1.36.18	0.030672
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	66	66	AY.3	0.000656
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	59	59	B.1.221	0.004191
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	59	59	B.28	0.193443
ORF1ab/nsp14A2-B	16	T16T	acT	acC	57	58	B.1.36.8	0.057
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	58	B.1.36.8	0.001
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	55	55	B.1.637	0.004019
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	49	49	AY.39	0.001211
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	49	49	AY.4.2	0.001063
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	49	49	B.1.427	0.002474
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	44	44	B.1.177.60	0.009611
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	41	41	AY.23	0.00286
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	40	40	B.1.160	0.001248
ORF1ab/nsp14A2-B	16	T16T	acT	acC	27	39	B.1.617.2	0.000102
ORF1ab/nsp14A2-B	16	T16T	acT	acG	9	39	B.1.617.2	0.000034
ORF1ab/nsp14A2-B	16	T16T	acT	acA	3	39	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	16	T16T	acT	acC	38	39	P.1	0.000599
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	39	P.1	0.000016
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	39	39	Q.3	0.005656
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	38	38	B.1.1.28	0.011827
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	36	36	AY.39.1	0.001426
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	35	35	AY.26	0.000991
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	35	35	AY.99.1	0.054348
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	34	34	P.1.10	0.009162
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	33	33	B.1.1.7	0.00003
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	31	31	B.1.177.7	0.00511
ORF1ab/nsp14A2-B	16	T16T	acT	acA	18	30	B.1.1.7	0.000016
ORF1ab/nsp14A2-B	16	T16T	acT	acC	9	30	B.1.1.7	0.000008
ORF1ab/nsp14A2-B	16	T16T	acT	acG	3	30	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	30	30	B.1.526	0.000705
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	30	30	B.1.567	0.1
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	29	29	AY.29	0.000457
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	29	29	B.1.177.73	0.016421
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	28	28	B.1.258	0.001863
ORF1ab/nsp14A2-B	16	T16T	acT	acG	28	28	B.1.427	0.001414
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	28	28	Q.1	0.003537
ORF1ab/nsp14A2-B	16	T16del	ACT	---	24	24	All	0.000005
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	24	24	B.1.243	0.00167
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	22	22	B.1.1.214	0.00122
ORF1ab/nsp14A2-B	16	T16T	acT	acC	22	22	B.1.1.519	0.000874
ORF1ab/nsp14A2-B	16	T16T	acT	acC	22	22	P.2	0.004106
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	21	21	AY.20	0.000816
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	21	21	AY.47	0.000653
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	20	20	AY.34	0.001939
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	19	19	AY.103	0.000118
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	19	19	B.1.258.17	0.001975
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	18	18	AY.45	0.00219
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	18	18	AY.75	0.001008
ORF1ab/nsp14A2-B	16	T16T	acT	acC	18	18	B.1.160	0.000561
ORF1ab/nsp14A2-B	16	T16T	acT	acC	15	18	B.1.2	0.000132
ORF1ab/nsp14A2-B	16	T16T	acT	acG	2	18	B.1.2	0.000018
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	18	B.1.2	0.000009
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	18	18	B.1.595	0.004697
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	17	17	B.1.234	0.002243
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	9	16	All	0.000002
ORF1ab/nsp14A2-B	16	T16S	Act	Tct	7	16	All	0.000001
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	16	16	B.1.177.21	0.001224
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	16	16	B.1.617.2	0.00006
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	15	15	AY.100	0.00069
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	15	15	AY.74	0.001735
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	15	15	AY.99.2	0.001382
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	15	15	B.1.349	0.010722
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	15	15	C.37	0.001741
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	14	14	AY.119	0.000494
ORF1ab/nsp14A2-B	16	T16T	acT	acC	12	14	B.1	0.00011
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	14	B.1	0.000009
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	14	B.1	0.000009
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	14	14	B.1.177.72	0.047458
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	14	14	B.1.351	0.000416
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	14	14	P.1	0.000221
ORF1ab/nsp14A2-B	16	T16T	acT	acC	9	13	AY.44	0.000055
ORF1ab/nsp14A2-B	16	T16T	acT	acA	2	13	AY.44	0.000012
ORF1ab/nsp14A2-B	16	T16T	acT	acG	2	13	AY.44	0.000012
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	13	13	AY.46	0.001353
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	13	13	B.1	0.000119
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	13	13	C.39	0.245283
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	12	12	AY.61	0.001257
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	12	12	P.1.7	0.003831
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	11	11	AY.42	0.000443
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	11	11	B.1.1	0.0002
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	11	11	B.1.147	0.008314
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	11	11	B.1.596	0.000959
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	10	10	AY.33	0.000668
ORF1ab/nsp14A2-B	16	T16T	acT	acC	10	10	AY.39	0.000247
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	10	10	AY.6	0.000411
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	10	10	AY.98	0.00079
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	10	10	B.1.2	0.000088
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	10	10	B.1.561	0.00397
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	10	10	P.1.17	0.001618
ORF1ab/nsp14A2-B	16	T16P	Act	Cct	8	9	All	0.000002
ORF1ab/nsp14A2-B	16	T16P	AcT	CcC	1	9	All	0
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	9	9	AY.113	0.001282
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	9	9	AY.118	0.000564
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	9	9	AY.25	0.000054
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	9	9	B.1.177.81	0.001704
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	9	9	P.2	0.00168
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	9	9	P.2	0.00168
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	8	8	AY.16.1	0.003759
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	8	8	AY.4	0.000012
ORF1ab/nsp14A2-B	16	T16T	acT	acC	5	8	AY.43	0.000022
ORF1ab/nsp14A2-B	16	T16T	acT	acG	2	8	AY.43	0.000009
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	8	AY.43	0.000004
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	8	8	AY.92	0.002298
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	8	8	B.1.1.216	0.007124
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	8	8	B.1.177.86	0.001468
ORF1ab/nsp14A2-B	16	T16T	acT	acA	7	8	B.1.596	0.00061
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	8	B.1.596	0.000087
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	8	8	D.2	0.0006
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	8	8	Q.8	0.001319
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	4	7		0.222222
ORF1ab/nsp14A2-B	16	T16N	aCT	aAC	3	7		0.166667
ORF1ab/nsp14A2-B	16	T16T	acT	acC	5	7	AY.103	0.000031
ORF1ab/nsp14A2-B	16	T16T	acT	acA	2	7	AY.103	0.000012
ORF1ab/nsp14A2-B	16	T16T	acT	acC	7	7	AY.111	0.001282
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	AY.121	0.000947
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	AY.13	0.001127
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	AY.35	0.001631
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	AY.5.3	0.002362
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	B.1.1.222	0.001428
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	B.1.36.17	0.003458
ORF1ab/nsp14A2-B	16	T16T	acT	acC	7	7	B.1.400	0.003003
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	7	7	B.1.526	0.000165
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	7	7	B.1.617.2	0.000026
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	B.1.621	0.00062
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	7	7	B.1.627	0.014141
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	AY.120.2.1	0.00299
ORF1ab/nsp14A2-B	16	T16T	acT	acA	5	6	AY.25	0.00003
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	6	AY.25	0.000006
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	AY.27	0.000388
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	AY.5.4	0.00166
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	AY.70	0.001251
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	AY.84	0.002625
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	6	6	B.1.2	0.000053
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	B.1.3	0.015707
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	B.1.311	0.001647
ORF1ab/nsp14A2-B	16	T16T	acT	acA	6	6	B.1.524	0.008439
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	6	6	B.1.565	0.004862
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	5	5	AY.117	0.000423
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	5	5	AY.3	0.00005
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	AY.36	0.000741
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	AY.59	0.002648
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	AY.67	0.002321
ORF1ab/nsp14A2-B	16	T16T	acT	acC	5	5	AY.74	0.000578
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	AY.75.1	0.000902
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	5	5	AY.99.2	0.000461
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.1.1	0.001633
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.1.317	0.002058
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.1.318	0.001509
ORF1ab/nsp14A2-B	16	T16del	ACT	---	5	5	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	5	5	B.1.177	0.000066
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.177.32	0.006748
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.177.45	0.001906
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.258.14	0.004902
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.36.31	0.008757
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	B.1.466.2	0.001956
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	5	5	N.4	0.021277
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	AY.110	0.000451
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	4	4	AY.20	0.000155
ORF1ab/nsp14A2-B	16	T16T	acT	acC	3	4	AY.3	0.00003
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	4	AY.3	0.00001
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	AY.4.5	0.00043
ORF1ab/nsp14A2-B	16	T16P	Act	Cct	4	4	AY.43	0.000018
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	4	4	AY.45	0.000487
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	AY.46.4	0.000658
ORF1ab/nsp14A2-B	16	T16T	acT	acG	4	4	AY.46.4	0.000658
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	AY.46.6	0.000289
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	AY.68	0.001095
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	AY.76	0.019324
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B	0.000511
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.1.263	0.006231
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	4	4	B.1.1.273	0.027027
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.1.297	0.008949
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.1.306	0.001754
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.1.316	0.0037
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.1.33	0.001684
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	4	4	B.1.1.348	0.003185
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.1.52	0.04878
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	4	4	B.1.1.7	0.000004
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.160.8	0.005155
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.177.57	0.001124
ORF1ab/nsp14A2-B	16	T16T	acT	acC	3	4	B.1.429	0.000071
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	4	B.1.429	0.000024
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	B.1.438.1	0.000429
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	P.1.12	0.001936
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	P.1.14	0.000191
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	4	4	Q.4	0.001819
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AE.8	0.001467
ORF1ab/nsp14A2-B	16	T16R	aCT	aGA	3	3	All	0.000001
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AU.3	0.006329
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.10	0.00159
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	3	AY.102	0.000053
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	3	AY.102	0.000027
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.109	0.002219
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.111	0.000549
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.14	0.000264
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	3	3	AY.25	0.000018
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.28	0.005671
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.3.1	0.000256
ORF1ab/nsp14A2-B	16	T16T	acT	acA	2	3	AY.39.1	0.000079
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	3	AY.39.1	0.00004
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	3	3	AY.43	0.000013
ORF1ab/nsp14A2-B	16	T16del	ACT	---	3	3	AY.43	0.000013
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	AY.98.1	0.000145
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	16	T16S	Act	Tct	2	3	B.1.1	0.000036
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	1	3	B.1.1	0.000018
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.153	0.003286
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.186	0.010309
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.291	0.002227
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.304	0.008427
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.312	0.005736
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.416	0.002715
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.1.486	0.004732
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	3	B.1.1.519	0.000079
ORF1ab/nsp14A2-B	16	T16N	aCT	aAC	1	3	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	16	T16P	Act	Cct	3	3	B.1.1.7	0.000003
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.110	0.013575
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.177.52	0.005272
ORF1ab/nsp14A2-B	16	T16T	acT	acC	3	3	B.1.177.69	0.004451
ORF1ab/nsp14A2-B	16	T16R	aCT	aGA	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.232	0.001612
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	3	B.1.258	0.000133
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	3	B.1.258	0.000067
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.36	0.000438
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.375	0.002459
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.525	0.000339
ORF1ab/nsp14A2-B	16	T16T	acT	acG	3	3	B.1.575	0.00091
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.577	0.002062
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	3	3	B.1.596	0.000261
ORF1ab/nsp14A2-B	16	T16T	acT	acC	3	3	B.1.609	0.001438
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.617.1	0.000387
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.1.623	0.001609
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.39	0.006993
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	B.4	0.006623
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	3	3	P.1	0.000047
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	P.1.15	0.000697
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	3	3	P.1.7	0.000958
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	P.3	0.004785
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	3	3	R.1	0.00027
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	2	2		0.111111
ORF1ab/nsp14A2-B	16	T16del	ACT	---	2	2		0.111111
ORF1ab/nsp14A2-B	16	T16H	ACT	CAC	1	2		0.055556
ORF1ab/nsp14A2-B	16	T16H	ACt	CAt	1	2		0.055556
ORF1ab/nsp14A2-B	16	T16P	AcT	CcC	1	2		0.055556
ORF1ab/nsp14A2-B	16	T16P	Act	Cct	1	2		0.055556
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	A	0.000774
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	A.2.5.1	0.009615
ORF1ab/nsp14A2-B	16	T16V	ACt	GTt	2	2	All	0
ORF1ab/nsp14A2-B	16	T16H	ACT	CAC	1	2	All	0
ORF1ab/nsp14A2-B	16	T16H	ACt	CAt	1	2	All	0
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.107	0.000932
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.114	0.000462
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.116	0.000574
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.116.1	0.000623
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.117	0.000169
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.120.1	0.000642
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.120.2	0.002571
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	2	AY.20	0.000078
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	2	AY.20	0.000078
ORF1ab/nsp14A2-B	16	T16del	ACT	---	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	2	AY.29	0.000016
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	2	AY.29	0.000016
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	2	2	AY.33	0.000134
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	2	AY.34	0.000097
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	2	AY.34	0.000097
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	2	2	AY.39	0.000049
ORF1ab/nsp14A2-B	16	T16T	acT	acA	2	2	AY.4.1	0.001475
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.4.2.1	0.000298
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.4.4	0.000818
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.41	0.000588
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	2	AY.5	0.000041
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.52	0.001629
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.55	0.001835
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.62	0.000871
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.65	0.001066
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.69	0.000373
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	2	AY.75	0.000112
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.77	0.002255
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.8	0.001212
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	2	2	AY.9.2	0.000073
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.90	0.001369
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	AY.99	0.002099
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.1.255	0.006061
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.1.258	0.006515
ORF1ab/nsp14A2-B	16	T16T	acT	acG	2	2	B.1.1.306	0.000877
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.1.326	0.003521
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.1.39	0.001019
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.1.528	0.009615
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	2	B.1.160	0.000062
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	2	B.1.160.16	0.001859
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	2	2	B.1.177.11	0.003396
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.177.23	0.006472
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.177.75	0.002081
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.177.9	0.002663
ORF1ab/nsp14A2-B	16	T16V	ACt	GTt	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.214.2	0.001199
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.22	0.002635
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.236	0.004107
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.240	0.000431
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	2	2	B.1.258	0.000133
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	2	2	B.1.351.2	0.000605
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	2	B.1.36	0.000292
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.36.1	0.002281
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.36.33	0.015152
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.409	0.001563
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	2	2	B.1.429	0.000047
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.470	0.002809
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	2	B.1.497	0.00063
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.505	0.008772
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.576	0.001813
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.628	0.000705
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.1.93	0.001867
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	B.3	0.001661
ORF1ab/nsp14A2-B	16	T16T	acT	acC	2	2	B.6	0.00182
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	2	C.37	0.000116
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	2	C.37	0.000116
ORF1ab/nsp14A2-B	16	T16S	Act	Tct	2	2	C.4	0.02
ORF1ab/nsp14A2-B	16	T16del	ACT	---	2	2	P.1	0.000032
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	P.1.16	0.000748
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	2	2	P.1.4	0.001953
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	2	2	P.1.7	0.000639
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1		0.055556
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	A	0.000387
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	A.1	0.000282
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	A.2	0.000662
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	A.2.4	0.003367
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	A.23.1	0.000704
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AD.2	0.000219
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AK.1	0.012658
ORF1ab/nsp14A2-B	16	T16del1	Act	-ct	1	1	All	0
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AP.1	0.001502
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AU.1	0.001266
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.1	0.000396
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	AY.100	0.000046
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.104	0.001984
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.106	0.000335
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	AY.109	0.00074
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.110	0.000113
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	1	1	AY.113	0.000142
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.12	0.000316
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	1	1	AY.121	0.000135
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	AY.4	0.000002
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.4.2	0.000022
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.4.3	0.000842
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	AY.44	0.000006
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.46.5	0.000198
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.47	0.000031
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.48	0.000465
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.49	0.003195
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.5.4	0.000277
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.50	0.000799
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.55	0.000917
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.57	0.000656
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.58	0.000907
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.64	0.000595
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.7	0.000196
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.7.2	0.000559
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	AY.70	0.000209
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.72	0.001361
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.78	0.001541
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.87	0.000833
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.89	0.004902
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.95	0.000761
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	AY.96	0.002075
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	1	B	0.000128
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	16	T16S	Act	Tct	1	1	B.1.1.1	0.000327
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	B.1.1.128	0.007092
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.141	0.002012
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	B.1.1.157	0.000913
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.170	0.001247
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.171	0.003676
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.176	0.000439
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.1.220	0.001859
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.243	0.004082
ORF1ab/nsp14A2-B	16	T16S	aCt	aGt	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.274	0.005051
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.1.274	0.005051
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.1.326	0.001761
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	B.1.1.331	0.011628
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.345	0.043478
ORF1ab/nsp14A2-B	16	T16S	Act	Tct	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.351	0.002793
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.372	0.000689
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.403	0.025641
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.417	0.002703
ORF1ab/nsp14A2-B	16	T16S	Act	Tct	1	1	B.1.1.485	0.016667
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.67	0.004566
ORF1ab/nsp14A2-B	16	T16del1	Act	-ct	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.111	0.001175
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.126	0.001276
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.139	0.000733
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.157	0.002985
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.160.15	0.00495
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.160.23	0.004831
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.169	0.014925
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.12	0.000152
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.16	0.000664
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.18	0.00116
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.2	0.004545
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.41	0.0025
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.5	0.001242
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.6	0.000977
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.8	0.000752
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.177.87	0.000728
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.189	0.004292
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.205	0.02381
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.206	0.000816
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.219	0.009434
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.221	0.000071
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.222	0.001692
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.298	0.002114
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.301	0.005917
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.340	0.004292
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.356	0.001727
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	B.1.36	0.000146
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.36.2	0.010753
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.36.22	0.001208
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.36.36	0.000602
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.381	0.007812
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.391	0.001127
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.393	0.028571
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.396	0.000706
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.400	0.000429
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.405	0.012346
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.408	0.00369
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	B.1.427	0.00005
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.438	0.006536
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.438.1	0.000107
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.443	0.004673
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.468	0.005714
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.471	0.002732
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.497	0.000315
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.503	0.002488
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.531	0.083333
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.538	0.008065
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.540	0.009709
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	16	T16del	ACT	---	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.564.1	0.001577
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.568	0.001111
ORF1ab/nsp14A2-B	16	T16A	Act	Gct	1	1	B.1.575	0.000303
ORF1ab/nsp14A2-B	16	T16N	aCt	aAt	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.588	0.00091
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.596.1	0.009346
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.620	0.000946
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	16	T16T	acT	acC	1	1	B.1.629	0.013333
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.634	0.003425
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.1.94	0.027027
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.29	0.003509
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	B.31	0.003731
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	1	B.35	0.007812
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.40	0.000364
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.6	0.00091
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	1	B.6.8	0.008264
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	C.2	0.016129
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	C.23	0.005814
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	C.36.3	0.000567
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	K.2	0.04
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	N.5	0.001767
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	P.1.1	0.000318
ORF1ab/nsp14A2-B	16	T16T	acT	acG	1	1	P.1.15	0.000232
ORF1ab/nsp14A2-B	16	T16T	acT	acA	1	1	P.1.17	0.000162
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	P.1.9	0.004808
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	P.4	0.003802
ORF1ab/nsp14A2-B	16	T16I	aCt	aTt	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.