CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 138 | A138V | A6063V | nonsyn | gCt | gTt | 2220 | 2220 | 1 | 18451-18453 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2220 | 2220 | All | 0.000425 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 442 | 442 | B.1 | 0.004049 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 409 | 409 | B.1.1.7 | 0.000366 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 192 | 192 | AY.43 | 0.000851 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 143 | 143 | AY.4 | 0.000223 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 122 | 122 | B.1.1.225 | 0.877698 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 104 | 104 | AY.32 | 0.055378 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 64 | 64 | B.1.177 | 0.000843 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 54 | 54 | AY.3.1 | 0.004604 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 49 | 49 | B.1.617.2 | 0.000185 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 35 | 35 | B.1.575 | 0.010619 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 33 | 33 | AY.4.2 | 0.000716 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 24 | 24 | P.1 | 0.000378 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 19 | 19 | B.1.36.16 | 0.027066 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 18 | 18 | B.1.1.214 | 0.000998 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 14 | 14 | B.1.609 | 0.006711 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 14 | 14 | C.16 | 0.014846 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 13 | 13 | P.1.17 | 0.002103 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 10 | 10 | AY.95 | 0.00761 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 7 | 7 | B.1.177.43 | 0.01034 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | B.1.222 | 0.010152 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | B.1.8 | 0.00789 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.1.309 | 0.011696 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.1.327 | 0.2 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.151 | 0.011111 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp14A2-B | 138 | A138V | gCt | gTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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