CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 128

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B128P128SP6053SnonsynCctTct7457440.99865818421-18423
ORF1ab/nsp14A2-B128P128SP6053SnonsynCCtAGt74510.0013422818421-18423
ORF1ab/nsp14A2-B128P128PP6053PsynccTccC91680.74725318421-18423
ORF1ab/nsp14A2-B128P128PP6053PsynccTccA91160.17582418421-18423
ORF1ab/nsp14A2-B128P128PP6053PsynccTccG9170.076923118421-18423
ORF1ab/nsp14A2-B128P128HP6053HnonsyncCtcAt5050118421-18423
ORF1ab/nsp14A2-B128P128delP6053deldelCCT---4545118421-18423
ORF1ab/nsp14A2-B128P128LP6053LnonsyncCtcTt2424118421-18423
ORF1ab/nsp14A2-B128P128TP6053TnonsynCctAct77118421-18423
ORF1ab/nsp14A2-B128P128FP6053FnonsynCCtTTt44118421-18423
ORF1ab/nsp14A2-B128P128del1P6053del1delCct-ct210.518421-18423
ORF1ab/nsp14A2-B128P128del1P6053del1delccTcc-210.518421-18423
ORF1ab/nsp14A2-B128P128AP6053AnonsynCctGct210.518421-18423
ORF1ab/nsp14A2-B128P128AP6053AnonsynCcTGcC210.518421-18423
ORF1ab/nsp14A2-B128P128del2P6053del2delcCTc--210.518421-18423
ORF1ab/nsp14A2-B128P128del2P6053del2delCCT--C210.518421-18423
ORF1ab/nsp14A2-B128P128DP6053DnonsynCCtGAt11118421-18423
ORF1ab/nsp14A2-B128P128NP6053NnonsynCCtAAt11118421-18423
ORF1ab/nsp14A2-B128P128MP6053MnonsynCCTATG11118421-18423

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B128P128SCctTct744745All0.000142
ORF1ab/nsp14A2-B128P128SCCtAGt1745All0
ORF1ab/nsp14A2-B128P128SCctTct375375B.1.1.70.000336
ORF1ab/nsp14A2-B128P128PccTccC6891All0.000013
ORF1ab/nsp14A2-B128P128PccTccA1691All0.000003
ORF1ab/nsp14A2-B128P128PccTccG791All0.000001
ORF1ab/nsp14A2-B128P128SCctTct8585B.1.5930.923913
ORF1ab/nsp14A2-B128P128HcCtcAt5050All0.00001
ORF1ab/nsp14A2-B128P128delCCT---4545All0.000009
ORF1ab/nsp14A2-B128P128SCctTct4444B.1.617.20.000166
ORF1ab/nsp14A2-B128P128PccTccC2829B.1.1.70.000025
ORF1ab/nsp14A2-B128P128PccTccA129B.1.1.70.000001
ORF1ab/nsp14A2-B128P128SCctTct2828AY.40.000044
ORF1ab/nsp14A2-B128P128SCctTct2828B.1.1600.000873
ORF1ab/nsp14A2-B128P128HcCtcAt2828B.1.4290.000659
ORF1ab/nsp14A2-B128P128LcCtcTt2424All0.000005
ORF1ab/nsp14A2-B128P128SCctTct1818AY.330.001202
ORF1ab/nsp14A2-B128P128SCctTct1717AY.1030.000106
ORF1ab/nsp14A2-B128P128SCctTct1616AY.250.000096
ORF1ab/nsp14A2-B128P128delCCT---1515AY.250.00009
ORF1ab/nsp14A2-B128P128delCCT---1313B.1.1.70.000012
ORF1ab/nsp14A2-B128P128SCctTct1313P.10.000205
ORF1ab/nsp14A2-B128P128SCctTct1212AY.440.000073
ORF1ab/nsp14A2-B128P128LcCtcTt1212B.1.1.70.000011
ORF1ab/nsp14A2-B128P128PccTccC512B.1.617.20.000019
ORF1ab/nsp14A2-B128P128PccTccG512B.1.617.20.000019
ORF1ab/nsp14A2-B128P128PccTccA212B.1.617.20.000008
ORF1ab/nsp14A2-B128P128SCctTct1010B.10.000092
ORF1ab/nsp14A2-B128P128PccTccA88AY.1210.001083
ORF1ab/nsp14A2-B128P128TCctAct77All0.000001
ORF1ab/nsp14A2-B128P128SCctTct77AY.1000.000322
ORF1ab/nsp14A2-B128P128SCctTct66AY.430.000027
ORF1ab/nsp14A2-B128P128PccTccC66AY.440.000037
ORF1ab/nsp14A2-B128P128SCctTct55AY.1170.000423
ORF1ab/nsp14A2-B128P128delCCT---55AY.430.000022
ORF1ab/nsp14A2-B128P128SCctTct55B.1.1.5190.000199
ORF1ab/nsp14A2-B128P128SCctTct55B.1.177.230.016181
ORF1ab/nsp14A2-B128P128delCCT---55B.1.617.20.000019
ORF1ab/nsp14A2-B128P128FCCtTTt44All0.000001
ORF1ab/nsp14A2-B128P128SCctTct44AY.200.000155
ORF1ab/nsp14A2-B128P128SCctTct33AY.160.001139
ORF1ab/nsp14A2-B128P128SCctTct33AY.290.000047
ORF1ab/nsp14A2-B128P128SCctTct33AY.30.00003
ORF1ab/nsp14A2-B128P128SCctTct33AY.34.10.00153
ORF1ab/nsp14A2-B128P128PccTccA23AY.40.000003
ORF1ab/nsp14A2-B128P128PccTccC13AY.40.000002
ORF1ab/nsp14A2-B128P128PccTccC23AY.430.000009
ORF1ab/nsp14A2-B128P128PccTccG13AY.430.000004
ORF1ab/nsp14A2-B128P128HcCtcAt33B.10.000027
ORF1ab/nsp14A2-B128P128FCCtTTt33B.1.1.70.000003
ORF1ab/nsp14A2-B128P128HcCtcAt33B.1.1.70.000003
ORF1ab/nsp14A2-B128P128SCctTct33B.1.1280.001906
ORF1ab/nsp14A2-B128P128SCctTct33B.1.1770.00004
ORF1ab/nsp14A2-B128P128PccTccC22A0.000774
ORF1ab/nsp14A2-B128P128del2CCT--C12All0
ORF1ab/nsp14A2-B128P128del1Cct-ct12All0
ORF1ab/nsp14A2-B128P128del1ccTcc-12All0
ORF1ab/nsp14A2-B128P128ACctGct12All0
ORF1ab/nsp14A2-B128P128ACcTGcC12All0
ORF1ab/nsp14A2-B128P128del2cCTc--12All0
ORF1ab/nsp14A2-B128P128PccTccC22AY.1130.000285
ORF1ab/nsp14A2-B128P128PccTccC22AY.1190.000071
ORF1ab/nsp14A2-B128P128HcCtcAt22AY.250.000012
ORF1ab/nsp14A2-B128P128HcCtcAt22AY.40.000003
ORF1ab/nsp14A2-B128P128SCctTct22AY.420.00008
ORF1ab/nsp14A2-B128P128LcCtcTt22AY.430.000009
ORF1ab/nsp14A2-B128P128SCctTct22AY.740.000231
ORF1ab/nsp14A2-B128P128PccTccC22AY.98.10.000097
ORF1ab/nsp14A2-B128P128SCctTct22AY.98.10.000097
ORF1ab/nsp14A2-B128P128delCCT---22B.1.10.000036
ORF1ab/nsp14A2-B128P128HcCtcAt22B.1.10.000036
ORF1ab/nsp14A2-B128P128SCctTct22B.1.1.1920.004619
ORF1ab/nsp14A2-B128P128SCctTct22B.1.1.280.000622
ORF1ab/nsp14A2-B128P128SCctTct22B.1.1.4340.000697
ORF1ab/nsp14A2-B128P128PccTccC22B.1.20.000018
ORF1ab/nsp14A2-B128P128LcCtcTt22B.1.5960.000174
ORF1ab/nsp14A2-B128P128HcCtcAt22B.1.617.20.000008
ORF1ab/nsp14A2-B128P128PccTccC22B.1.6210.000177
ORF1ab/nsp14A2-B128P128SCctTct11A.2.5.20.001572
ORF1ab/nsp14A2-B128P128MCCTATG11All0
ORF1ab/nsp14A2-B128P128NCCtAAt11All0
ORF1ab/nsp14A2-B128P128DCCtGAt11All0
ORF1ab/nsp14A2-B128P128SCctTct11AY.1020.000027
ORF1ab/nsp14A2-B128P128TCctAct11AY.1030.000006
ORF1ab/nsp14A2-B128P128TCctAct11AY.1100.000113
ORF1ab/nsp14A2-B128P128SCctTct11AY.1180.000063
ORF1ab/nsp14A2-B128P128delCCT---11AY.1200.000037
ORF1ab/nsp14A2-B128P128PccTccC11AY.16.10.00047
ORF1ab/nsp14A2-B128P128SCctTct11AY.210.001898
ORF1ab/nsp14A2-B128P128SCctTct11AY.230.00007
ORF1ab/nsp14A2-B128P128ACcTGcC11AY.250.000006
ORF1ab/nsp14A2-B128P128del2CCT--C11AY.250.000006
ORF1ab/nsp14A2-B128P128SCctTct11AY.260.000028
ORF1ab/nsp14A2-B128P128PccTccC11AY.260.000028
ORF1ab/nsp14A2-B128P128HcCtcAt11AY.260.000028
ORF1ab/nsp14A2-B128P128LcCtcTt11AY.30.00001
ORF1ab/nsp14A2-B128P128PccTccC11AY.30.00001
ORF1ab/nsp14A2-B128P128SCctTct11AY.300.000396
ORF1ab/nsp14A2-B128P128FCCtTTt11AY.40.000002
ORF1ab/nsp14A2-B128P128DCCtGAt11AY.40.000002
ORF1ab/nsp14A2-B128P128LcCtcTt11AY.40.000002
ORF1ab/nsp14A2-B128P128TCctAct11AY.40.000002
ORF1ab/nsp14A2-B128P128SCctTct11AY.4.20.000022
ORF1ab/nsp14A2-B128P128HcCtcAt11AY.430.000004
ORF1ab/nsp14A2-B128P128MCCTATG11AY.430.000004
ORF1ab/nsp14A2-B128P128SCctTct11AY.50.000021
ORF1ab/nsp14A2-B128P128delCCT---11AY.530.000288
ORF1ab/nsp14A2-B128P128SCctTct11AY.590.00053
ORF1ab/nsp14A2-B128P128PccTccC11AY.610.000105
ORF1ab/nsp14A2-B128P128SCctTct11AY.610.000105
ORF1ab/nsp14A2-B128P128TCctAct11AY.690.000187
ORF1ab/nsp14A2-B128P128delCCT---11AY.9.20.000037
ORF1ab/nsp14A2-B128P128SCctTct11AY.910.00073
ORF1ab/nsp14A2-B128P128PccTccC11B.10.000009
ORF1ab/nsp14A2-B128P128LcCtcTt11B.10.000009
ORF1ab/nsp14A2-B128P128SCctTct11B.1.10.000018
ORF1ab/nsp14A2-B128P128PccTccA11B.1.10.000018
ORF1ab/nsp14A2-B128P128PccTccA11B.1.1.10.000327
ORF1ab/nsp14A2-B128P128PccTccC11B.1.1.1490.016393
ORF1ab/nsp14A2-B128P128SCctTct11B.1.1.3020.002075
ORF1ab/nsp14A2-B128P128del1ccTcc-11B.1.1.3060.000438
ORF1ab/nsp14A2-B128P128SCctTct11B.1.1.3830.0625
ORF1ab/nsp14A2-B128P128PccTccG11B.1.1.5120.028571
ORF1ab/nsp14A2-B128P128PccTccC11B.1.1.5190.00004
ORF1ab/nsp14A2-B128P128SCctTct11B.1.1.570.011494
ORF1ab/nsp14A2-B128P128SCctTct11B.1.1.670.004566
ORF1ab/nsp14A2-B128P128del2cCTc--11B.1.1.70.000001
ORF1ab/nsp14A2-B128P128SCctTct11B.1.1.700.000341
ORF1ab/nsp14A2-B128P128PccTccC11B.1.1600.000031
ORF1ab/nsp14A2-B128P128SCctTct11B.1.160.120.00641
ORF1ab/nsp14A2-B128P128TCctAct11B.1.160.140.002119
ORF1ab/nsp14A2-B128P128LcCtcTt11B.1.1770.000013
ORF1ab/nsp14A2-B128P128SCctTct11B.1.177.120.000152
ORF1ab/nsp14A2-B128P128TCctAct11B.1.177.440.000519
ORF1ab/nsp14A2-B128P128PccTccC11B.1.177.530.002392
ORF1ab/nsp14A2-B128P128SCctTct11B.1.177.750.001041
ORF1ab/nsp14A2-B128P128PccTccC11B.1.177.830.001481
ORF1ab/nsp14A2-B128P128SCctTct11B.1.177.830.001481
ORF1ab/nsp14A2-B128P128ACctGct11B.1.1790.003759
ORF1ab/nsp14A2-B128P128delCCT---11B.1.20.000009
ORF1ab/nsp14A2-B128P128LcCtcTt11B.1.20.000009
ORF1ab/nsp14A2-B128P128PccTccC11B.1.214.20.0006
ORF1ab/nsp14A2-B128P128SCCtAGt11B.1.221.40.004167
ORF1ab/nsp14A2-B128P128SCctTct11B.1.2580.000067
ORF1ab/nsp14A2-B128P128LcCtcTt11B.1.2580.000067
ORF1ab/nsp14A2-B128P128SCctTct11B.1.258.140.00098
ORF1ab/nsp14A2-B128P128HcCtcAt11B.1.258.170.000104
ORF1ab/nsp14A2-B128P128SCctTct11B.1.3510.00003
ORF1ab/nsp14A2-B128P128del1Cct-ct11B.1.36.80.001
ORF1ab/nsp14A2-B128P128SCctTct11B.1.3990.001934
ORF1ab/nsp14A2-B128P128PccTccC11B.1.4270.00005
ORF1ab/nsp14A2-B128P128SCctTct11B.1.4290.000024
ORF1ab/nsp14A2-B128P128HcCtcAt11B.1.429.10.012048
ORF1ab/nsp14A2-B128P128PccTccA11B.1.5150.014493
ORF1ab/nsp14A2-B128P128PccTccC11B.1.5460.003704
ORF1ab/nsp14A2-B128P128SCctTct11B.1.5640.000426
ORF1ab/nsp14A2-B128P128SCctTct11B.1.6090.000479
ORF1ab/nsp14A2-B128P128HcCtcAt11B.1.6230.000536
ORF1ab/nsp14A2-B128P128SCctTct11B.60.00091
ORF1ab/nsp14A2-B128P128SCctTct11C.140.004329
ORF1ab/nsp14A2-B128P128SCctTct11C.36.30.000567
ORF1ab/nsp14A2-B128P128LcCtcTt11D.20.000075
ORF1ab/nsp14A2-B128P128HcCtcAt11D.20.000075
ORF1ab/nsp14A2-B128P128PccTccC11P.10.000016
ORF1ab/nsp14A2-B128P128HcCtcAt11P.10.000016
ORF1ab/nsp14A2-B128P128HcCtcAt11P.1.140.000048
ORF1ab/nsp14A2-B128P128TCctAct11P.1.140.000048
ORF1ab/nsp14A2-B128P128NCCtAAt11P.1.140.000048
ORF1ab/nsp14A2-B128P128SCctTct11P.1.170.000162
ORF1ab/nsp14A2-B128P128SCctTct11Q.10.000126
ORF1ab/nsp14A2-B128P128delCCT---11Q.20.000613
ORF1ab/nsp14A2-B128P128SCctTct11Q.30.000145
ORF1ab/nsp14A2-B128P128LcCtcTt11Q.30.000145
ORF1ab/nsp14A2-B128P128SCctTct11Q.80.000165