CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 117 | L117L | L6042L | syn | Cta | Tta | 924 | 465 | 0.503247 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117L | L6042L | syn | ctA | ctG | 924 | 431 | 0.46645 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117L | L6042L | syn | ctA | ctT | 924 | 22 | 0.0238095 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117L | L6042L | syn | ctA | ctC | 924 | 6 | 0.00649351 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117I | L6042I | nonsyn | Cta | Ata | 762 | 762 | 1 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117del | L6042del | del | CTA | --- | 26 | 26 | 1 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117P | L6042P | nonsyn | cTa | cCa | 12 | 10 | 0.833333 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117P | L6042P | nonsyn | cTA | cCC | 12 | 1 | 0.0833333 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117P | L6042P | nonsyn | cTA | cCT | 12 | 1 | 0.0833333 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117V | L6042V | nonsyn | Cta | Gta | 4 | 4 | 1 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117Q | L6042Q | nonsyn | cTa | cAa | 3 | 3 | 1 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117del1 | L6042del1 | del | ctA | ct- | 1 | 1 | 1 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117H | L6042H | nonsyn | cTA | cAT | 1 | 1 | 1 | 18388-18390 |
ORF1ab/nsp14A2-B | 117 | L117del2 | L6042del2 | del | cTA | c-- | 1 | 1 | 1 | 18388-18390 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 465 | 924 | All | 0.000089 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 431 | 924 | All | 0.000082 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 22 | 924 | All | 0.000004 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 6 | 924 | All | 0.000001 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 762 | 762 | All | 0.000146 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 425 | 425 | AY.4 | 0.000661 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 166 | 166 | B.1.429 | 0.003906 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 142 | 142 | B.1.1.517 | 0.965986 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 84 | 114 | B.1.1.7 | 0.000075 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 27 | 114 | B.1.1.7 | 0.000024 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 2 | 114 | B.1.1.7 | 0.000002 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 1 | 114 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 103 | 103 | AY.101 | 0.050515 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 53 | 62 | AY.4 | 0.000082 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 9 | 62 | AY.4 | 0.000014 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 43 | 62 | B.1.617.2 | 0.000162 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 19 | 62 | B.1.617.2 | 0.000072 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 22 | 31 | AY.43 | 0.000097 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 5 | 31 | AY.43 | 0.000022 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 3 | 31 | AY.43 | 0.000013 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 1 | 31 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 29 | 29 | N.5 | 0.051237 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 26 | 26 | All | 0.000005 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 10 | 20 | B.1 | 0.000092 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 7 | 20 | B.1 | 0.000064 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 3 | 20 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 15 | 17 | AY.102 | 0.000398 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 17 | AY.102 | 0.000053 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 16 | 16 | AY.54 | 0.001526 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 16 | 16 | B.1.428.3 | 0.205128 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 11 | 14 | AY.44 | 0.000067 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 3 | 14 | AY.44 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 11 | 13 | AY.39 | 0.000272 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 13 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 10 | 13 | B.1.1 | 0.000181 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 13 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 13 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 8 | 13 | P.1 | 0.000126 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 5 | 13 | P.1 | 0.000079 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 10 | 12 | All | 0.000002 |
ORF1ab/nsp14A2-B | 117 | L117P | cTA | cCC | 1 | 12 | All | 0 |
ORF1ab/nsp14A2-B | 117 | L117P | cTA | cCT | 1 | 12 | All | 0 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 7 | 10 | AY.25 | 0.000042 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 3 | 10 | AY.25 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 5 | 10 | B.1.2 | 0.000044 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 4 | 10 | B.1.2 | 0.000035 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 10 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 7 | 8 | AY.42 | 0.000282 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 8 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 8 | 8 | B.1.453 | 0.02589 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 7 | 7 | AY.46.3 | 0.006536 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 5 | 7 | B.1.1.519 | 0.000199 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 7 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 4 | 6 | AY.26 | 0.000113 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 6 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 6 | 6 | P.1.10 | 0.001617 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 3 | 5 | AY.103 | 0.000019 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 5 | AY.103 | 0.000012 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 5 | AY.29 | 0.000032 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 5 | AY.29 | 0.000032 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 5 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 3 | 5 | AY.4.2 | 0.000065 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 2 | 5 | AY.4.2 | 0.000043 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 2 | 5 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 5 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 5 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 4 | 5 | B.1.429 | 0.000094 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 5 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp14A2-B | 117 | L117V | Cta | Gta | 4 | 4 | All | 0.000001 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 3 | 4 | AY.45 | 0.000365 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 4 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 4 | AY.47 | 0.000062 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 4 | AY.47 | 0.000062 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 2 | 3 | 0.111111 | |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 1 | 3 | 0.055556 | |
ORF1ab/nsp14A2-B | 117 | L117Q | cTa | cAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 3 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 3 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 3 | 3 | B.1.1.374 | 0.007126 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 3 | 3 | B.1.177.5 | 0.003727 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 3 | 3 | B.1.417 | 0.085714 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp14A2-B | 117 | L117P | cTA | cCC | 1 | 2 | 0.055556 | |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 2 | 0.055556 | |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 2 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 2 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 2 | 2 | B.1.1.56 | 0.035714 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 117 | L117P | cTA | cCT | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp14A2-B | 117 | L117V | Cta | Gta | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 117 | L117H | cTA | cAT | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 117 | L117del2 | cTA | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 117 | L117del1 | ctA | ct- | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 117 | L117Q | cTa | cAa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp14A2-B | 117 | L117V | Cta | Gta | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 117 | L117Q | cTa | cAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp14A2-B | 117 | L117del2 | cTA | c-- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 117 | L117Q | cTa | cAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 117 | L117del1 | ctA | ct- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp14A2-B | 117 | L117H | cTA | cAT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 117 | L117del | CTA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp14A2-B | 117 | L117V | Cta | Gta | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp14A2-B | 117 | L117P | cTa | cCa | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 117 | L117I | Cta | Ata | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 117 | L117L | ctA | ctG | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 117 | L117L | Cta | Tta | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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