CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 117

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B117L117LL6042LsynCtaTta9244650.50324718388-18390
ORF1ab/nsp14A2-B117L117LL6042LsynctActG9244310.4664518388-18390
ORF1ab/nsp14A2-B117L117LL6042LsynctActT924220.023809518388-18390
ORF1ab/nsp14A2-B117L117LL6042LsynctActC92460.0064935118388-18390
ORF1ab/nsp14A2-B117L117IL6042InonsynCtaAta762762118388-18390
ORF1ab/nsp14A2-B117L117delL6042deldelCTA---2626118388-18390
ORF1ab/nsp14A2-B117L117PL6042PnonsyncTacCa12100.83333318388-18390
ORF1ab/nsp14A2-B117L117PL6042PnonsyncTAcCC1210.083333318388-18390
ORF1ab/nsp14A2-B117L117PL6042PnonsyncTAcCT1210.083333318388-18390
ORF1ab/nsp14A2-B117L117VL6042VnonsynCtaGta44118388-18390
ORF1ab/nsp14A2-B117L117QL6042QnonsyncTacAa33118388-18390
ORF1ab/nsp14A2-B117L117del1L6042del1delctAct-11118388-18390
ORF1ab/nsp14A2-B117L117HL6042HnonsyncTAcAT11118388-18390
ORF1ab/nsp14A2-B117L117del2L6042del2delcTAc--11118388-18390

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B117L117LCtaTta465924All0.000089
ORF1ab/nsp14A2-B117L117LctActG431924All0.000082
ORF1ab/nsp14A2-B117L117LctActT22924All0.000004
ORF1ab/nsp14A2-B117L117LctActC6924All0.000001
ORF1ab/nsp14A2-B117L117ICtaAta762762All0.000146
ORF1ab/nsp14A2-B117L117ICtaAta425425AY.40.000661
ORF1ab/nsp14A2-B117L117ICtaAta166166B.1.4290.003906
ORF1ab/nsp14A2-B117L117LCtaTta142142B.1.1.5170.965986
ORF1ab/nsp14A2-B117L117LCtaTta84114B.1.1.70.000075
ORF1ab/nsp14A2-B117L117LctActG27114B.1.1.70.000024
ORF1ab/nsp14A2-B117L117LctActT2114B.1.1.70.000002
ORF1ab/nsp14A2-B117L117LctActC1114B.1.1.70.000001
ORF1ab/nsp14A2-B117L117LctActG103103AY.1010.050515
ORF1ab/nsp14A2-B117L117LCtaTta5362AY.40.000082
ORF1ab/nsp14A2-B117L117LctActG962AY.40.000014
ORF1ab/nsp14A2-B117L117LctActG4362B.1.617.20.000162
ORF1ab/nsp14A2-B117L117LCtaTta1962B.1.617.20.000072
ORF1ab/nsp14A2-B117L117LCtaTta2231AY.430.000097
ORF1ab/nsp14A2-B117L117LctActG531AY.430.000022
ORF1ab/nsp14A2-B117L117LctActT331AY.430.000013
ORF1ab/nsp14A2-B117L117LctActC131AY.430.000004
ORF1ab/nsp14A2-B117L117LctActG2929N.50.051237
ORF1ab/nsp14A2-B117L117delCTA---2626All0.000005
ORF1ab/nsp14A2-B117L117ICtaAta2424B.1.617.20.00009
ORF1ab/nsp14A2-B117L117LCtaTta1020B.10.000092
ORF1ab/nsp14A2-B117L117LctActG720B.10.000064
ORF1ab/nsp14A2-B117L117LctActT320B.10.000027
ORF1ab/nsp14A2-B117L117ICtaAta2020B.1.1.70.000018
ORF1ab/nsp14A2-B117L117LctActG1919AY.50.000392
ORF1ab/nsp14A2-B117L117LctActG1517AY.1020.000398
ORF1ab/nsp14A2-B117L117LCtaTta217AY.1020.000053
ORF1ab/nsp14A2-B117L117LctActG1616AY.540.001526
ORF1ab/nsp14A2-B117L117LctActG1616B.1.428.30.205128
ORF1ab/nsp14A2-B117L117ICtaAta1515B.10.000137
ORF1ab/nsp14A2-B117L117LctActG1114AY.440.000067
ORF1ab/nsp14A2-B117L117LCtaTta314AY.440.000018
ORF1ab/nsp14A2-B117L117LctActG1113AY.390.000272
ORF1ab/nsp14A2-B117L117LCtaTta213AY.390.000049
ORF1ab/nsp14A2-B117L117LCtaTta1013B.1.10.000181
ORF1ab/nsp14A2-B117L117LctActG213B.1.10.000036
ORF1ab/nsp14A2-B117L117LctActT113B.1.10.000018
ORF1ab/nsp14A2-B117L117LCtaTta813P.10.000126
ORF1ab/nsp14A2-B117L117LctActG513P.10.000079
ORF1ab/nsp14A2-B117L117PcTacCa1012All0.000002
ORF1ab/nsp14A2-B117L117PcTAcCC112All0
ORF1ab/nsp14A2-B117L117PcTAcCT112All0
ORF1ab/nsp14A2-B117L117ICtaAta1212AY.430.000053
ORF1ab/nsp14A2-B117L117LCtaTta1212B.1.2580.000799
ORF1ab/nsp14A2-B117L117ICtaAta1111B.1.3510.000327
ORF1ab/nsp14A2-B117L117LctActG710AY.250.000042
ORF1ab/nsp14A2-B117L117LCtaTta310AY.250.000018
ORF1ab/nsp14A2-B117L117LCtaTta510B.1.20.000044
ORF1ab/nsp14A2-B117L117LctActG410B.1.20.000035
ORF1ab/nsp14A2-B117L117LctActT110B.1.20.000009
ORF1ab/nsp14A2-B117L117delCTA---99B.1.1.70.000008
ORF1ab/nsp14A2-B117L117LctActG78AY.420.000282
ORF1ab/nsp14A2-B117L117LCtaTta18AY.420.00004
ORF1ab/nsp14A2-B117L117LCtaTta88B.1.4530.02589
ORF1ab/nsp14A2-B117L117ICtaAta77AY.1020.000186
ORF1ab/nsp14A2-B117L117ICtaAta77AY.30.00007
ORF1ab/nsp14A2-B117L117LCtaTta77AY.30.00007
ORF1ab/nsp14A2-B117L117ICtaAta77AY.46.30.006536
ORF1ab/nsp14A2-B117L117LctActG57B.1.1.5190.000199
ORF1ab/nsp14A2-B117L117LCtaTta27B.1.1.5190.000079
ORF1ab/nsp14A2-B117L117ICtaAta66AY.1160.001721
ORF1ab/nsp14A2-B117L117LctActG46AY.260.000113
ORF1ab/nsp14A2-B117L117LCtaTta26AY.260.000057
ORF1ab/nsp14A2-B117L117LctActG66AY.460.000624
ORF1ab/nsp14A2-B117L117LctActG66P.1.100.001617
ORF1ab/nsp14A2-B117L117LctActG35AY.1030.000019
ORF1ab/nsp14A2-B117L117LCtaTta25AY.1030.000012
ORF1ab/nsp14A2-B117L117LctActG55AY.1060.001674
ORF1ab/nsp14A2-B117L117ICtaAta55AY.230.000349
ORF1ab/nsp14A2-B117L117LCtaTta25AY.290.000032
ORF1ab/nsp14A2-B117L117LctActG25AY.290.000032
ORF1ab/nsp14A2-B117L117LctActT15AY.290.000016
ORF1ab/nsp14A2-B117L117LctActG35AY.4.20.000065
ORF1ab/nsp14A2-B117L117LctActT25AY.4.20.000043
ORF1ab/nsp14A2-B117L117LctActG55AY.5.30.001687
ORF1ab/nsp14A2-B117L117LctActT25AY.60.000082
ORF1ab/nsp14A2-B117L117LCtaTta25AY.60.000082
ORF1ab/nsp14A2-B117L117LctActG15AY.60.000041
ORF1ab/nsp14A2-B117L117LCtaTta45B.1.4290.000094
ORF1ab/nsp14A2-B117L117LctActG15B.1.4290.000024
ORF1ab/nsp14A2-B117L117ICtaAta55B.1.617.10.000645
ORF1ab/nsp14A2-B117L117VCtaGta44All0.000001
ORF1ab/nsp14A2-B117L117delCTA---44AY.250.000024
ORF1ab/nsp14A2-B117L117ICtaAta44AY.390.000099
ORF1ab/nsp14A2-B117L117LctActG34AY.450.000365
ORF1ab/nsp14A2-B117L117LCtaTta14AY.450.000122
ORF1ab/nsp14A2-B117L117LCtaTta24AY.470.000062
ORF1ab/nsp14A2-B117L117LctActG24AY.470.000062
ORF1ab/nsp14A2-B117L117LCtaTta44B.1.1.2220.000816
ORF1ab/nsp14A2-B117L117ICtaAta44B.1.1770.000053
ORF1ab/nsp14A2-B117L117LctActG44P.1.140.000191
ORF1ab/nsp14A2-B117L117LctActT230.111111
ORF1ab/nsp14A2-B117L117LctActC130.055556
ORF1ab/nsp14A2-B117L117QcTacAa33All0.000001
ORF1ab/nsp14A2-B117L117ICtaAta33AY.39.10.000119
ORF1ab/nsp14A2-B117L117ICtaAta33AY.440.000018
ORF1ab/nsp14A2-B117L117LctActG23AY.610.00021
ORF1ab/nsp14A2-B117L117LctActT13AY.610.000105
ORF1ab/nsp14A2-B117L117LCtaTta23AY.9.20.000073
ORF1ab/nsp14A2-B117L117LctActG13AY.9.20.000037
ORF1ab/nsp14A2-B117L117LCtaTta33AY.99.20.000276
ORF1ab/nsp14A2-B117L117delCTA---33B.10.000027
ORF1ab/nsp14A2-B117L117LCtaTta33B.1.1.3740.007126
ORF1ab/nsp14A2-B117L117ICtaAta33B.1.1.5190.000119
ORF1ab/nsp14A2-B117L117LCtaTta23B.1.1600.000062
ORF1ab/nsp14A2-B117L117LctActG13B.1.1600.000031
ORF1ab/nsp14A2-B117L117PcTacCa33B.1.177.50.003727
ORF1ab/nsp14A2-B117L117LCtaTta33B.1.4170.085714
ORF1ab/nsp14A2-B117L117ICtaAta33P.10.000047
ORF1ab/nsp14A2-B117L117LctActG33P.1.10.000953
ORF1ab/nsp14A2-B117L117PcTAcCC120.055556
ORF1ab/nsp14A2-B117L117PcTacCa120.055556
ORF1ab/nsp14A2-B117L117LctActG22AY.1000.000092
ORF1ab/nsp14A2-B117L117LctActG12AY.120.10.000321
ORF1ab/nsp14A2-B117L117LCtaTta12AY.120.10.000321
ORF1ab/nsp14A2-B117L117LctActG22AY.1210.000271
ORF1ab/nsp14A2-B117L117LCtaTta22AY.270.000129
ORF1ab/nsp14A2-B117L117LCtaTta22AY.3.10.000171
ORF1ab/nsp14A2-B117L117LCtaTta12AY.330.000067
ORF1ab/nsp14A2-B117L117LctActG12AY.330.000067
ORF1ab/nsp14A2-B117L117LctActG22AY.360.000296
ORF1ab/nsp14A2-B117L117LctActG22AY.370.000632
ORF1ab/nsp14A2-B117L117ICtaAta22AY.650.001066
ORF1ab/nsp14A2-B117L117ICtaAta22AY.75.10.000361
ORF1ab/nsp14A2-B117L117LctActG22AY.930.000546
ORF1ab/nsp14A2-B117L117LCtaTta22B.1.1.3060.000877
ORF1ab/nsp14A2-B117L117LCtaTta22B.1.1.3980.006452
ORF1ab/nsp14A2-B117L117LctActT12B.1.1.4340.000349
ORF1ab/nsp14A2-B117L117LCtaTta12B.1.1.4340.000349
ORF1ab/nsp14A2-B117L117ICtaAta22B.1.1.560.035714
ORF1ab/nsp14A2-B117L117delCTA---22B.1.20.000018
ORF1ab/nsp14A2-B117L117ICtaAta22B.1.2210.000142
ORF1ab/nsp14A2-B117L117LctActG22B.1.2340.000264
ORF1ab/nsp14A2-B117L117ICtaAta22B.1.258.170.000208
ORF1ab/nsp14A2-B117L117LCtaTta22B.1.30.005236
ORF1ab/nsp14A2-B117L117LctActG22B.1.36.180.00084
ORF1ab/nsp14A2-B117L117ICtaAta22B.1.36.290.001035
ORF1ab/nsp14A2-B117L117LCtaTta22B.1.36.380.003284
ORF1ab/nsp14A2-B117L117LCtaTta22B.1.3980.005952
ORF1ab/nsp14A2-B117L117LctActG22B.1.4000.000858
ORF1ab/nsp14A2-B117L117LctActG22B.1.438.10.000215
ORF1ab/nsp14A2-B117L117PcTacCa12B.1.5250.000113
ORF1ab/nsp14A2-B117L117PcTAcCT12B.1.5250.000113
ORF1ab/nsp14A2-B117L117LctActG22B.1.5950.000522
ORF1ab/nsp14A2-B117L117LCtaTta22B.1.6090.000959
ORF1ab/nsp14A2-B117L117VCtaGta22B.1.617.20.000008
ORF1ab/nsp14A2-B117L117delCTA---22B.1.617.20.000008
ORF1ab/nsp14A2-B117L117LctActG22B.1.6210.000177
ORF1ab/nsp14A2-B117L117LCtaTta22C.370.000232
ORF1ab/nsp14A2-B117L117LCtaTta22P.1.70.000639
ORF1ab/nsp14A2-B117L117ICtaAta11A0.000387
ORF1ab/nsp14A2-B117L117HcTAcAT11All0
ORF1ab/nsp14A2-B117L117del2cTAc--11All0
ORF1ab/nsp14A2-B117L117del1ctAct-11All0
ORF1ab/nsp14A2-B117L117ICtaAta11AY.1050.000643
ORF1ab/nsp14A2-B117L117delCTA---11AY.1110.000183
ORF1ab/nsp14A2-B117L117LCtaTta11AY.1160.000287
ORF1ab/nsp14A2-B117L117LctActG11AY.1170.000085
ORF1ab/nsp14A2-B117L117ICtaAta11AY.1190.000035
ORF1ab/nsp14A2-B117L117LCtaTta11AY.120.000316
ORF1ab/nsp14A2-B117L117ICtaAta11AY.1200.000037
ORF1ab/nsp14A2-B117L117delCTA---11AY.1200.000037
ORF1ab/nsp14A2-B117L117LCtaTta11AY.230.00007
ORF1ab/nsp14A2-B117L117ICtaAta11AY.250.000006
ORF1ab/nsp14A2-B117L117PcTacCa11AY.250.000006
ORF1ab/nsp14A2-B117L117ICtaAta11AY.290.000016
ORF1ab/nsp14A2-B117L117QcTacAa11AY.30.00001
ORF1ab/nsp14A2-B117L117LCtaTta11AY.300.000396
ORF1ab/nsp14A2-B117L117LctActG11AY.340.000097
ORF1ab/nsp14A2-B117L117LctActC11AY.34.10.00051
ORF1ab/nsp14A2-B117L117VCtaGta11AY.390.000025
ORF1ab/nsp14A2-B117L117delCTA---11AY.4.50.000107
ORF1ab/nsp14A2-B117L117LCtaTta11AY.4.50.000107
ORF1ab/nsp14A2-B117L117PcTacCa11AY.440.000006
ORF1ab/nsp14A2-B117L117QcTacAa11AY.440.000006
ORF1ab/nsp14A2-B117L117ICtaAta11AY.450.000122
ORF1ab/nsp14A2-B117L117del2cTAc--11AY.460.000104
ORF1ab/nsp14A2-B117L117ICtaAta11AY.46.60.000072
ORF1ab/nsp14A2-B117L117ICtaAta11AY.5.40.000277
ORF1ab/nsp14A2-B117L117LctActG11AY.520.000814
ORF1ab/nsp14A2-B117L117ICtaAta11AY.520.000814
ORF1ab/nsp14A2-B117L117ICtaAta11AY.710.000475
ORF1ab/nsp14A2-B117L117LctActG11AY.740.000116
ORF1ab/nsp14A2-B117L117LctActG11AY.750.000056
ORF1ab/nsp14A2-B117L117LctActG11AY.90.000068
ORF1ab/nsp14A2-B117L117LctActG11AY.940.000443
ORF1ab/nsp14A2-B117L117ICtaAta11AY.98.10.000048
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.10.000018
ORF1ab/nsp14A2-B117L117delCTA---11B.1.10.000018
ORF1ab/nsp14A2-B117L117LctActG11B.1.1.2140.000055
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.1.2160.00089
ORF1ab/nsp14A2-B117L117LctActG11B.1.1.2940.001266
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.1.630.000386
ORF1ab/nsp14A2-B117L117QcTacAa11B.1.1.70.000001
ORF1ab/nsp14A2-B117L117del1ctAct-11B.1.1.70.000001
ORF1ab/nsp14A2-B117L117LctActC11B.1.1.80.003584
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.110.30.000718
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.1110.001175
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.1570.002985
ORF1ab/nsp14A2-B117L117delCTA---11B.1.1770.000013
ORF1ab/nsp14A2-B117L117PcTacCa11B.1.1770.000013
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.177.120.000152
ORF1ab/nsp14A2-B117L117LctActG11B.1.177.40.000211
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.177.570.000281
ORF1ab/nsp14A2-B117L117LctActC11B.1.177.860.000183
ORF1ab/nsp14A2-B117L117HcTAcAT11B.1.20.000009
ORF1ab/nsp14A2-B117L117PcTacCa11B.1.20.000009
ORF1ab/nsp14A2-B117L117delCTA---11B.1.258.30.001675
ORF1ab/nsp14A2-B117L117VCtaGta11B.1.3330.010526
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.3460.001311
ORF1ab/nsp14A2-B117L117PcTacCa11B.1.3500.002933
ORF1ab/nsp14A2-B117L117LctActG11B.1.3510.00003
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.360.000146
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.36.80.001
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.4530.003236
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.466.10.007194
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.5170.000427
ORF1ab/nsp14A2-B117L117LctActT11B.1.5250.000113
ORF1ab/nsp14A2-B117L117LctActT11B.1.5260.000024
ORF1ab/nsp14A2-B117L117LctActG11B.1.5610.000397
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.5650.00081
ORF1ab/nsp14A2-B117L117LCtaTta11B.1.5960.000087
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.6230.000536
ORF1ab/nsp14A2-B117L117LctActT11B.1.6370.000073
ORF1ab/nsp14A2-B117L117ICtaAta11B.1.6370.000073
ORF1ab/nsp14A2-B117L117LctActG11B.400.000364
ORF1ab/nsp14A2-B117L117LctActG11C.140.004329
ORF1ab/nsp14A2-B117L117LCtaTta11D.20.000075
ORF1ab/nsp14A2-B117L117LCtaTta11Q.10.000126