CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 115 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B115V115AV6040AnonsyngTtgCt131131118382-18384

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B115V115AgTtgCt131131All0.000025
ORF1ab/nsp14A2-B115V115AgTtgCt3131AY.430.000137
ORF1ab/nsp14A2-B115V115AgTtgCt3030B.1.1.70.000027
ORF1ab/nsp14A2-B115V115AgTtgCt2121B.1.1770.000277
ORF1ab/nsp14A2-B115V115AgTtgCt1111AY.34.10.005609
ORF1ab/nsp14A2-B115V115AgTtgCt1010AY.30.000099
ORF1ab/nsp14A2-B115V115AgTtgCt33AY.40.000005
ORF1ab/nsp14A2-B115V115AgTtgCt33B.1.20.000026
ORF1ab/nsp14A2-B115V115AgTtgCt22AY.4.20.000043
ORF1ab/nsp14A2-B115V115AgTtgCt22AY.440.000012
ORF1ab/nsp14A2-B115V115AgTtgCt22B.1.1.630.000772
ORF1ab/nsp14A2-B115V115AgTtgCt22C.310.035714
ORF1ab/nsp14A2-B115V115AgTtgCt11AY.1020.000027
ORF1ab/nsp14A2-B115V115AgTtgCt11AY.260.000028
ORF1ab/nsp14A2-B115V115AgTtgCt11AY.290.000016
ORF1ab/nsp14A2-B115V115AgTtgCt11AY.39.10.00004
ORF1ab/nsp14A2-B115V115AgTtgCt11AY.50.000021
ORF1ab/nsp14A2-B115V115AgTtgCt11AY.9.20.000037
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.10.000018
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.1.250.000569
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.1.4130.006897
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.1.5190.00004
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.177.750.001041
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.2400.000216
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.36.290.000517
ORF1ab/nsp14A2-B115V115AgTtgCt11B.1.617.20.000004

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.