CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : CodonNum = 115

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	115	V115V	V6040V	syn	gtT	gtC	745	695	0.932886	18382-18384
ORF1ab/nsp14A2-B	115	V115V	V6040V	syn	gtT	gtA	745	46	0.061745	18382-18384
ORF1ab/nsp14A2-B	115	V115V	V6040V	syn	gtT	gtG	745	4	0.00536913	18382-18384
ORF1ab/nsp14A2-B	115	V115I	V6040I	nonsyn	Gtt	Att	505	505	1	18382-18384
ORF1ab/nsp14A2-B	115	V115F	V6040F	nonsyn	Gtt	Ttt	431	431	1	18382-18384
ORF1ab/nsp14A2-B	115	V115A	V6040A	nonsyn	gTt	gCt	131	131	1	18382-18384
ORF1ab/nsp14A2-B	115	V115del	V6040del	del	GTT	---	24	24	1	18382-18384
ORF1ab/nsp14A2-B	115	V115L	V6040L	nonsyn	Gtt	Ctt	5	4	0.8	18382-18384
ORF1ab/nsp14A2-B	115	V115L	V6040L	nonsyn	GtT	TtG	5	1	0.2	18382-18384
ORF1ab/nsp14A2-B	115	V115D	V6040D	nonsyn	gTt	gAt	4	4	1	18382-18384
ORF1ab/nsp14A2-B	115	V115del1	V6040del1	del	Gtt	-tt	2	2	1	18382-18384
ORF1ab/nsp14A2-B	115	V115G	V6040G	nonsyn	gTt	gGt	2	1	0.5	18382-18384
ORF1ab/nsp14A2-B	115	V115G	V6040G	nonsyn	gTT	gGG	2	1	0.5	18382-18384
ORF1ab/nsp14A2-B	115	V115W	V6040W	nonsyn	GTT	TGG	1	1	1	18382-18384
ORF1ab/nsp14A2-B	115	V115Y	V6040Y	nonsyn	GTt	TAt	1	1	1	18382-18384
ORF1ab/nsp14A2-B	115	V115C	V6040C	nonsyn	GTt	TGt	1	1	1	18382-18384
ORF1ab/nsp14A2-B	115	V115N	V6040N	nonsyn	GTt	AAt	1	1	1	18382-18384

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	695	745	All	0.000133
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	46	745	All	0.000009
ORF1ab/nsp14A2-B	115	V115V	gtT	gtG	4	745	All	0.000001
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	505	505	All	0.000097
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	494	494	AY.101	0.242276
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	431	431	All	0.000082
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	234	234	B.1.160.29	0.987342
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	153	153	AY.103	0.00095
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	131	131	All	0.000025
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	74	74	AY.43	0.000328
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	63	63	B.1.617.2	0.000237
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	62	62	B.1.160	0.001934
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	60	60	B.1.1.7	0.000054
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	46	48	B.1.1.7	0.000041
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	48	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	115	V115V	gtT	gtG	1	48	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	39	39	AY.67	0.018106
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	23	39	B.1.617.2	0.000087
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	16	39	B.1.617.2	0.00006
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	31	31	AY.43	0.000137
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	30	30	B.1.1.7	0.000027
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	28	28	B.1.1.7	0.000025
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	26	26	B.1.429	0.000612
ORF1ab/nsp14A2-B	115	V115del	GTT	---	24	24	All	0.000005
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	20	21	AY.4	0.000031
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	21	AY.4	0.000002
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	21	21	B.1.177	0.000277
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	18	18	AY.4	0.000028
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	9	15	AY.43	0.00004
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	6	15	AY.43	0.000027
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	15	15	B.1.177	0.000198
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	14	14	AY.3	0.000139
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	12	12	AY.102	0.000318
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	12	12	B.1.427	0.000606
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	11	11	AY.34.1	0.005609
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	10	10	AY.3	0.000099
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	10	10	B.1.2	0.000088
ORF1ab/nsp14A2-B	115	V115del	GTT	---	9	9	B.1.1.7	0.000008
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	8	8	P.1	0.000126
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	7	7	AY.42	0.000282
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	6	7	AY.44	0.000037
ORF1ab/nsp14A2-B	115	V115V	gtT	gtG	1	7	AY.44	0.000006
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	7	7	AY.98	0.000553
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	7	7	B.1.177.87	0.005095
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	7	7	B.1.258	0.000466
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	6	6	AY.102	0.000159
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	6	6	B.1.2	0.000053
ORF1ab/nsp14A2-B	115	V115L	Gtt	Ctt	4	5	All	0.000001
ORF1ab/nsp14A2-B	115	V115L	GtT	TtG	1	5	All	0
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	5	5	AY.117	0.000423
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	5	5	AY.23	0.000349
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	5	5	AY.39	0.000124
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	5	5	AY.43	0.000022
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	5	5	AY.46.4	0.000823
ORF1ab/nsp14A2-B	115	V115D	gTt	gAt	4	4	All	0.000001
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	4	4	AY.103	0.000025
ORF1ab/nsp14A2-B	115	V115del	GTT	---	4	4	AY.25	0.000024
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	4	4	AY.42	0.000161
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	4	4	AY.44	0.000024
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	4	4	AY.46	0.000416
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	4	4	B.1	0.000037
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	4	4	Q.4	0.001819
ORF1ab/nsp14A2-B	115	V115L	Gtt	Ctt	2	3		0.111111
ORF1ab/nsp14A2-B	115	V115L	GtT	TtG	1	3		0.055556
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	3	3	AY.25	0.000018
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	3	3	AY.3	0.00003
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	3	3	AY.4	0.000005
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	3	3	B.1	0.000027
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	3	B.1	0.000018
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	3	B.1	0.000009
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	3	3	B.1.2	0.000026
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	3	B.1.2	0.000018
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	3	B.1.2	0.000009
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	3	3	B.1.221	0.000213
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	3	3	B.1.469	0.01083
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	3	3	B.1.617.2	0.000011
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	3	3	B.1.621	0.000266
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	3	3	B.1.631	0.010101
ORF1ab/nsp14A2-B	115	V115G	gTt	gGt	1	2		0.055556
ORF1ab/nsp14A2-B	115	V115G	gTT	gGG	1	2		0.055556
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	A.2.5	0.000998
ORF1ab/nsp14A2-B	115	V115del1	Gtt	-tt	2	2	All	0
ORF1ab/nsp14A2-B	115	V115G	gTt	gGt	1	2	All	0
ORF1ab/nsp14A2-B	115	V115G	gTT	gGG	1	2	All	0
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	2	AY.106	0.00067
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	AY.116	0.000574
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	2	AY.119	0.000071
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	2	AY.120	0.000037
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	2	AY.120	0.000037
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	2	2	AY.25	0.000012
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	2	AY.32	0.001065
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	2	AY.34	0.000194
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	2	2	AY.4.2	0.000043
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	2	2	AY.44	0.000012
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	AY.6	0.000082
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	AY.75	0.000112
ORF1ab/nsp14A2-B	115	V115del	GTT	---	2	2	B.1	0.000018
ORF1ab/nsp14A2-B	115	V115del	GTT	---	2	2	B.1.1	0.000036
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	2	B.1.1	0.000018
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	2	2	B.1.1.216	0.001781
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	2	2	B.1.1.63	0.000772
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	2	2	B.1.177	0.000026
ORF1ab/nsp14A2-B	115	V115D	gTt	gAt	2	2	B.1.2	0.000018
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	2	B.1.243	0.00007
ORF1ab/nsp14A2-B	115	V115V	gtT	gtG	1	2	B.1.243	0.00007
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	2	2	B.1.311	0.000549
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	B.1.526	0.000047
ORF1ab/nsp14A2-B	115	V115del	GTT	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	2	2	C.31	0.035714
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	2	2	N.9	0.011905
ORF1ab/nsp14A2-B	115	V115C	GTt	TGt	1	1		0.055556
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1		0.055556
ORF1ab/nsp14A2-B	115	V115W	GTT	TGG	1	1		0.055556
ORF1ab/nsp14A2-B	115	V115V	gtT	gtG	1	1		0.055556
ORF1ab/nsp14A2-B	115	V115W	GTT	TGG	1	1	All	0
ORF1ab/nsp14A2-B	115	V115C	GTt	TGt	1	1	All	0
ORF1ab/nsp14A2-B	115	V115N	GTt	AAt	1	1	All	0
ORF1ab/nsp14A2-B	115	V115Y	GTt	TAt	1	1	All	0
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	AY.102	0.000027
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.119	0.000035
ORF1ab/nsp14A2-B	115	V115del	GTT	---	1	1	AY.120	0.000037
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.16.1	0.00047
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.2	0.000356
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.23	0.00007
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.25	0.000006
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.26	0.000028
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	AY.29	0.000016
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.36	0.000148
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.39	0.000025
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	AY.39.1	0.00004
ORF1ab/nsp14A2-B	115	V115del	GTT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.42	0.00004
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.45	0.000122
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.46.1	0.001027
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.48	0.000465
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	AY.5	0.000021
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	AY.9	0.000068
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	AY.9.2	0.000037
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	AY.99.2	0.000092
ORF1ab/nsp14A2-B	115	V115del1	Gtt	-tt	1	1	B.1	0.000009
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.1	0.000018
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.1.222	0.000204
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.1.232	0.001815
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.1.25	0.000569
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.1.263	0.001558
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.1.284	0.000107
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.1.316	0.000925
ORF1ab/nsp14A2-B	115	V115D	gTt	gAt	1	1	B.1.1.350	0.04
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.1.413	0.006897
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.1.420	0.001006
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.1.51	0.001718
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.1.519	0.00004
ORF1ab/nsp14A2-B	115	V115L	Gtt	Ctt	1	1	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	B.1.1.8	0.003584
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	115	V115del	GTT	---	1	1	B.1.177	0.000013
ORF1ab/nsp14A2-B	115	V115L	Gtt	Ctt	1	1	B.1.177.44	0.000519
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.177.75	0.001041
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.177.79	0.002342
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.177.80	0.001912
ORF1ab/nsp14A2-B	115	V115del	GTT	---	1	1	B.1.2	0.000009
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	B.1.240	0.000216
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.258	0.000067
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.258.17	0.000104
ORF1ab/nsp14A2-B	115	V115del	GTT	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.258.4	0.003448
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.320	0.001245
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	B.1.324	0.001605
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	B.1.333	0.010526
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.351	0.00003
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.36.29	0.000517
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.367	0.000792
ORF1ab/nsp14A2-B	115	V115V	gtT	gtA	1	1	B.1.369	0.000285
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.429	0.000024
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.466.2	0.000391
ORF1ab/nsp14A2-B	115	V115Y	GTt	TAt	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	115	V115N	GTt	AAt	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	115	V115D	gTt	gAt	1	1	B.1.525	0.000113
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.526	0.000024
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.596	0.000087
ORF1ab/nsp14A2-B	115	V115del1	Gtt	-tt	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	115	V115A	gTt	gCt	1	1	B.1.617.2	0.000004
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.1.620	0.000946
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	B.1.621	0.000089
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	B.45	0.003831
ORF1ab/nsp14A2-B	115	V115I	Gtt	Att	1	1	P.1	0.000016
ORF1ab/nsp14A2-B	115	V115V	gtT	gtC	1	1	P.1.14	0.000048
ORF1ab/nsp14A2-B	115	V115F	Gtt	Ttt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.