CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 109 | L109L | L6034L | syn | ctA | ctG | 3630 | 3320 | 0.914601 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109L | L6034L | syn | Cta | Tta | 3630 | 290 | 0.0798898 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109L | L6034L | syn | ctA | ctT | 3630 | 18 | 0.00495868 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109L | L6034L | syn | ctA | ctC | 3630 | 2 | 0.000550964 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109I | L6034I | nonsyn | Cta | Ata | 131 | 131 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109del | L6034del | del | CTA | --- | 30 | 30 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109P | L6034P | nonsyn | cTa | cCa | 5 | 5 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109V | L6034V | nonsyn | Cta | Gta | 3 | 3 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109Q | L6034Q | nonsyn | cTa | cAa | 2 | 2 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109S | L6034S | nonsyn | CTA | TCG | 2 | 2 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109del2 | L6034del2 | del | cTA | c-- | 1 | 1 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109F | L6034F | nonsyn | CtA | TtT | 1 | 1 | 1 | 18364-18366 |
ORF1ab/nsp14A2-B | 109 | L109del1 | L6034del1 | del | cTa | c-a | 1 | 1 | 1 | 18364-18366 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3320 | 3630 | All | 0.000635 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 290 | 3630 | All | 0.000055 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 18 | 3630 | All | 0.000003 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctC | 2 | 3630 | All | 0 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 642 | 648 | AY.4 | 0.000999 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 6 | 648 | AY.4 | 0.000009 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 558 | 616 | B.1.1.7 | 0.0005 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 55 | 616 | B.1.1.7 | 0.000049 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 3 | 616 | B.1.1.7 | 0.000003 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 600 | 600 | A.27 | 0.993377 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 330 | 330 | B.1.1.4 | 0.982143 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 114 | 144 | AY.25 | 0.000686 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 30 | 144 | AY.25 | 0.00018 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 131 | 131 | All | 0.000025 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 103 | 110 | B.1.617.2 | 0.000388 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 6 | 110 | B.1.617.2 | 0.000023 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctC | 1 | 110 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 102 | 102 | B.1.617.2 | 0.000384 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 90 | 94 | B.1 | 0.000824 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 4 | 94 | B.1 | 0.000037 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 78 | 79 | AY.20 | 0.003031 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 79 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 68 | 78 | AY.43 | 0.000301 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 9 | 78 | AY.43 | 0.00004 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctC | 1 | 78 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 66 | 66 | AY.100 | 0.003036 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 36 | 53 | B.1.2 | 0.000317 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 17 | 53 | B.1.2 | 0.00015 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 52 | 53 | B.1.429 | 0.001224 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 53 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 39 | 39 | P.1.16 | 0.01459 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 30 | 30 | All | 0.000006 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 22 | 28 | AY.39 | 0.000544 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 6 | 28 | AY.39 | 0.000148 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 14 | 26 | AY.103 | 0.000087 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 12 | 26 | AY.103 | 0.000075 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 22 | 24 | AY.3 | 0.000219 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 24 | AY.3 | 0.00002 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 22 | 24 | AY.44 | 0.000134 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 24 | AY.44 | 0.000012 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 23 | 24 | P.1 | 0.000362 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 24 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 23 | 23 | B.1.620 | 0.02176 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 21 | 21 | AY.46.6 | 0.001516 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 19 | 20 | AY.47 | 0.000591 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 20 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 12 | 20 | AY.6 | 0.000494 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 8 | 20 | AY.6 | 0.000329 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 15 | 19 | AY.119 | 0.00053 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 4 | 19 | AY.119 | 0.000141 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 16 | 16 | AY.46.4 | 0.002632 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 13 | 15 | B.1.1 | 0.000236 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 2 | 15 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 8 | 14 | AY.29 | 0.000126 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 5 | 14 | AY.29 | 0.000079 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 1 | 14 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 13 | 13 | B.1.480 | 0.032338 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 11 | 12 | B.1.351 | 0.000327 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 12 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 7 | 9 | AY.45 | 0.000852 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 9 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 9 | 9 | AY.99.1 | 0.013975 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 9 | 9 | B | 0.00115 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 9 | 9 | B.1.36.29 | 0.004656 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 9 | 9 | P.1.4 | 0.008789 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 6 | 8 | AY.75 | 0.000336 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 8 | AY.75 | 0.000112 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 8 | 8 | B.1.1.328 | 0.135593 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 8 | 8 | B.1.609 | 0.003835 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 7 | 7 | A | 0.002709 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 6 | 6 | B.1.1.266 | 0.073171 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp14A2-B | 109 | L109P | cTa | cCa | 5 | 5 | All | 0.000001 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 5 | B.1.1.50 | 0.002716 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 5 | B.1.1.50 | 0.000679 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 5 | 5 | B.1.206 | 0.004078 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | A.2.5.2 | 0.006289 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 4 | AY.33 | 0.0002 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 4 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | AY.56 | 0.006421 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 3 | 4 | B.1.637 | 0.000219 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 4 | B.1.637 | 0.000073 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | A.29 | 0.015957 |
ORF1ab/nsp14A2-B | 109 | L109V | Cta | Gta | 3 | 3 | All | 0.000001 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | B.1.1.161 | 0.010601 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | B.1.1.336 | 0.05 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 3 | 3 | B.1.146 | 0.012712 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | B.1.433 | 0.009585 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp14A2-B | 109 | L109S | CTA | TCG | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 2 | 0.055556 | |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 1 | 2 | 0.055556 | |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 2 | A.2 | 0.000662 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 1 | 2 | A.2 | 0.000662 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp14A2-B | 109 | L109Q | cTa | cAa | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 109 | L109S | CTA | TCG | 2 | 2 | All | 0 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 2 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 2 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp14A2-B | 109 | L109P | cTa | cCa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp14A2-B | 109 | L109F | CtA | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 109 | L109del1 | cTa | c-a | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 109 | L109del2 | cTA | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 109 | L109V | Cta | Gta | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 109 | L109V | Cta | Gta | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp14A2-B | 109 | L109Q | cTa | cAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 109 | L109V | Cta | Gta | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 109 | L109P | cTa | cCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp14A2-B | 109 | L109I | Cta | Ata | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 109 | L109P | cTa | cCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 109 | L109F | CtA | TtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 109 | L109Q | cTa | cAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp14A2-B | 109 | L109del2 | cTA | c-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp14A2-B | 109 | L109del | CTA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 109 | L109L | Cta | Tta | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp14A2-B | 109 | L109del1 | cTa | c-a | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 109 | L109P | cTa | cCa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp14A2-B | 109 | L109L | ctA | ctG | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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