CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = Y31del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1331Y31del1Y5355del1deltaCta-730.42857116327-16329
ORF1ab/nsp1331Y31del1Y5355del1delTac-ac730.42857116327-16329
ORF1ab/nsp1331Y31del1Y5355del1deltAct-c710.14285716327-16329

Details of the mutation Y31del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1331Y31del1taCta-37All0.000001
ORF1ab/nsp1331Y31del1Tac-ac37All0.000001
ORF1ab/nsp1331Y31del1tAct-c17All0
ORF1ab/nsp1331Y31del1Tac-ac34B.1.1.70.000003
ORF1ab/nsp1331Y31del1taCta-14B.1.1.70.000001
ORF1ab/nsp1331Y31del1tAct-c12B.1.617.20.000004
ORF1ab/nsp1331Y31del1taCta-12B.1.617.20.000004
ORF1ab/nsp1331Y31del1taCta-11A.20.000662