CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 49 | V49I | V5373I | nonsyn | Gtt | Att | 3143 | 3143 | 1 | 16381-16383 |
Details of the mutation V49I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3143 | 3143 | All | 0.000601 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 789 | 789 | AY.43 | 0.003496 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 431 | 431 | B.1.1 | 0.007819 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 136 | 136 | AY.4.5 | 0.014619 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 128 | 128 | AY.42 | 0.005149 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 127 | 127 | B.1.1.7 | 0.000114 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 110 | 110 | AY.7.2 | 0.061521 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 100 | 100 | A | 0.0387 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 91 | 91 | AY.46 | 0.009471 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 90 | 90 | AY.46.1 | 0.092402 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 87 | 87 | AY.98.1 | 0.004213 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 78 | 78 | A.4 | 1 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 77 | 77 | AY.61 | 0.008068 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 74 | 74 | AY.5.4 | 0.020476 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 65 | 65 | AY.39 | 0.001606 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 64 | 64 | AY.34 | 0.006206 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 45 | 45 | AY.71 | 0.021378 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 44 | 44 | B.1.617.2 | 0.000166 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 42 | 42 | AY.9.1 | 0.003516 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 37 | 37 | AY.4 | 0.000058 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 35 | 35 | AY.46.6 | 0.002527 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 33 | 33 | AY.75.1 | 0.00595 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 31 | 31 | AY.116 | 0.00889 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 31 | 31 | AY.33 | 0.00207 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 27 | 27 | AY.9.2 | 0.000992 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 21 | 21 | AY.54 | 0.002002 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 18 | 18 | P.1.1 | 0.005718 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 16 | 16 | C.36.3 | 0.009075 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 13 | 13 | AY.53 | 0.003738 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 13 | 13 | AY.70 | 0.002711 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 12 | 12 | AY.68 | 0.003285 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 10 | 10 | AY.106 | 0.003349 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 10 | 10 | AY.62 | 0.004357 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 9 | 9 | B.1.1.161 | 0.031802 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 8 | 8 | B.1.1.354 | 0.035088 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | AY.41 | 0.002058 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | AY.67 | 0.00325 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | B | 0.000895 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 6 | 6 | AY.58 | 0.005445 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 6 | 6 | AY.65 | 0.003198 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 6 | 6 | B.1.1.409 | 0.016997 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 49 | V49I | Gtt | Att | 1 | 1 | C.36 | 0.000911 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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