CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 484 | V484V | V5808V | syn | gtT | gtC | 847 | 818 | 0.965761 | 17686-17688 |
ORF1ab/nsp13 | 484 | V484V | V5808V | syn | gtT | gtG | 847 | 21 | 0.0247934 | 17686-17688 |
ORF1ab/nsp13 | 484 | V484V | V5808V | syn | gtT | gtA | 847 | 8 | 0.0094451 | 17686-17688 |
Details of the mutation V484V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 818 | 847 | All | 0.000156 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 21 | 847 | All | 0.000004 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 8 | 847 | All | 0.000002 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 250 | 261 | B.1.1.7 | 0.000224 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 10 | 261 | B.1.1.7 | 0.000009 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 1 | 261 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 184 | 184 | B.1.218 | 0.948454 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 88 | 89 | AY.4 | 0.000137 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 1 | 89 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 89 | 89 | B.1.617.2 | 0.000335 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 9 | 10 | B.1.1 | 0.000163 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 1 | 10 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 5 | 10 | P.1 | 0.000079 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 3 | 10 | P.1 | 0.000047 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 2 | 10 | P.1 | 0.000032 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 6 | 7 | B.1.351 | 0.000178 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 1 | 7 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 5 | 6 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 1 | 6 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 5 | 5 | B.1.471 | 0.013661 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 3 | 4 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 4 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | B.1.1.359 | 0.055556 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtG | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp13 | 484 | V484V | gtT | gtC | 1 | 1 | P.6 | 0.003145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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