CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = V42V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1342V42VV5366VsyngtCgtT501448550.96828916360-16362
ORF1ab/nsp1342V42VV5366VsyngtCgtA50141320.026326316360-16362
ORF1ab/nsp1342V42VV5366VsyngtCgtG5014270.0053849216360-16362

Details of the mutation V42V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1342V42VgtCgtT48555014All0.000929
ORF1ab/nsp1342V42VgtCgtA1325014All0.000025
ORF1ab/nsp1342V42VgtCgtG275014All0.000005
ORF1ab/nsp1342V42VgtCgtT796840B.1.1.70.000713
ORF1ab/nsp1342V42VgtCgtA38840B.1.1.70.000034
ORF1ab/nsp1342V42VgtCgtG6840B.1.1.70.000005
ORF1ab/nsp1342V42VgtCgtT751782AY.40.001169
ORF1ab/nsp1342V42VgtCgtA30782AY.40.000047
ORF1ab/nsp1342V42VgtCgtG1782AY.40.000002
ORF1ab/nsp1342V42VgtCgtT710710B.1.1.3770.980663
ORF1ab/nsp1342V42VgtCgtT299301B.1.617.20.001126
ORF1ab/nsp1342V42VgtCgtA1301B.1.617.20.000004
ORF1ab/nsp1342V42VgtCgtG1301B.1.617.20.000004
ORF1ab/nsp1342V42VgtCgtT123123AY.1030.000764
ORF1ab/nsp1342V42VgtCgtT107107B.1.6370.007819
ORF1ab/nsp1342V42VgtCgtT9397B.1.1.2070.109929
ORF1ab/nsp1342V42VgtCgtA497B.1.1.2070.004728
ORF1ab/nsp1342V42VgtCgtT9091P.10.001418
ORF1ab/nsp1342V42VgtCgtA191P.10.000016
ORF1ab/nsp1342V42VgtCgtT8586P.1.140.004063
ORF1ab/nsp1342V42VgtCgtA186P.1.140.000048
ORF1ab/nsp1342V42VgtCgtT7172AY.250.000427
ORF1ab/nsp1342V42VgtCgtA172AY.250.000006
ORF1ab/nsp1342V42VgtCgtT6568B.10.000595
ORF1ab/nsp1342V42VgtCgtA368B.10.000027
ORF1ab/nsp1342V42VgtCgtT6464AY.430.000284
ORF1ab/nsp1342V42VgtCgtT6464B.570.969697
ORF1ab/nsp1342V42VgtCgtT5657AY.440.000341
ORF1ab/nsp1342V42VgtCgtA157AY.440.000006
ORF1ab/nsp1342V42VgtCgtT5555B.1.1.2740.277778
ORF1ab/nsp1342V42VgtCgtT5555B.1.1770.000724
ORF1ab/nsp1342V42VgtCgtT5253AY.470.001617
ORF1ab/nsp1342V42VgtCgtA153AY.470.000031
ORF1ab/nsp1342V42VgtCgtT5151AY.3.10.004348
ORF1ab/nsp1342V42VgtCgtT4647B.1.20.000405
ORF1ab/nsp1342V42VgtCgtA147B.1.20.000009
ORF1ab/nsp1342V42VgtCgtT4646AY.30.000458
ORF1ab/nsp1342V42VgtCgtT4545B.1.177.150.028391
ORF1ab/nsp1342V42VgtCgtT4242AY.560.067416
ORF1ab/nsp1342V42VgtCgtT3939B.1.2430.002714
ORF1ab/nsp1342V42VgtCgtT3838AY.1020.001008
ORF1ab/nsp1342V42VgtCgtT3638B.1.10.000653
ORF1ab/nsp1342V42VgtCgtA238B.1.10.000036
ORF1ab/nsp1342V42VgtCgtT3131AY.4.2.10.004619
ORF1ab/nsp1342V42VgtCgtT3030AY.330.002003
ORF1ab/nsp1342V42VgtCgtT3030B.1.5260.000705
ORF1ab/nsp1342V42VgtCgtT2829AY.50.000578
ORF1ab/nsp1342V42VgtCgtA129AY.50.000021
ORF1ab/nsp1342V42VgtCgtT2828AY.200.001088
ORF1ab/nsp1342V42VgtCgtT2727P.1.10.008577
ORF1ab/nsp1342V42VgtCgtT2225AY.260.000623
ORF1ab/nsp1342V42VgtCgtG325AY.260.000085
ORF1ab/nsp1342V42VgtCgtT2424B.1.1.1700.029925
ORF1ab/nsp1342V42VgtCgtA1623AY.4.50.00172
ORF1ab/nsp1342V42VgtCgtT423AY.4.50.00043
ORF1ab/nsp1342V42VgtCgtG323AY.4.50.000322
ORF1ab/nsp1342V42VgtCgtT2222B.1.177.170.018062
ORF1ab/nsp1342V42VgtCgtT2021B.1.1.2140.001109
ORF1ab/nsp1342V42VgtCgtA121B.1.1.2140.000055
ORF1ab/nsp1342V42VgtCgtT1919B.1.110.30.013649
ORF1ab/nsp1342V42VgtCgtT1818AY.390.000445
ORF1ab/nsp1342V42VgtCgtT1418B.1.4290.000329
ORF1ab/nsp1342V42VgtCgtG418B.1.4290.000094
ORF1ab/nsp1342V42VgtCgtT1818B.1.4970.005666
ORF1ab/nsp1342V42VgtCgtT1717AY.1000.000782
ORF1ab/nsp1342V42VgtCgtT1717AY.120.10.005457
ORF1ab/nsp1342V42VgtCgtT1717P.1.150.00395
ORF1ab/nsp1342V42VgtCgtT1616B.1.5250.001811
ORF1ab/nsp1342V42VgtCgtT1515B.1.3510.000446
ORF1ab/nsp1342V42VgtCgtT1414AY.1180.000877
ORF1ab/nsp1342V42VgtCgtT1414B.1.1.370.0027
ORF1ab/nsp1342V42VgtCgtT1313AY.420.000523
ORF1ab/nsp1342V42VgtCgtT1212B.1.1.2220.002448
ORF1ab/nsp1342V42VgtCgtT1212B.1.1.2940.01519
ORF1ab/nsp1342V42VgtCgtT1212B.1.2210.000852
ORF1ab/nsp1342V42VgtCgtT1212B.1.2390.014652
ORF1ab/nsp1342V42VgtCgtT1111AY.29.10.002426
ORF1ab/nsp1342V42VgtCgtT1111AY.590.005826
ORF1ab/nsp1342V42VgtCgtT1111B.1.1.5190.000437
ORF1ab/nsp1342V42VgtCgtT1111B.1.214.20.006595
ORF1ab/nsp1342V42VgtCgtT1011B.1.4270.000505
ORF1ab/nsp1342V42VgtCgtA111B.1.4270.00005
ORF1ab/nsp1342V42VgtCgtT1111B.1.5960.000959
ORF1ab/nsp1342V42VgtCgtT1111C.370.001277
ORF1ab/nsp1342V42VgtCgtT1010AY.610.001048
ORF1ab/nsp1342V42VgtCgtA510AY.90.000338
ORF1ab/nsp1342V42VgtCgtT510AY.90.000338
ORF1ab/nsp1342V42VgtCgtT1010B.1.360.001459
ORF1ab/nsp1342V42VgtCgtT1010R.10.0009
ORF1ab/nsp1342V42VgtCgtT99AY.1200.000335
ORF1ab/nsp1342V42VgtCgtT99AY.1210.001218
ORF1ab/nsp1342V42VgtCgtT99B.1.1.1890.013616
ORF1ab/nsp1342V42VgtCgtT88AY.290.000126
ORF1ab/nsp1342V42VgtCgtT88AY.920.002298
ORF1ab/nsp1342V42VgtCgtT88B.1.1.2840.000859
ORF1ab/nsp1342V42VgtCgtT88B.1.1.560.142857
ORF1ab/nsp1342V42VgtCgtT88B.1.2580.000532
ORF1ab/nsp1342V42VgtCgtT77AY.230.000488
ORF1ab/nsp1342V42VgtCgtT77B.1.1600.000218
ORF1ab/nsp1342V42VgtCgtT77B.1.4000.003003
ORF1ab/nsp1342V42VgtCgtA57B.1.438.10.000536
ORF1ab/nsp1342V42VgtCgtT27B.1.438.10.000215
ORF1ab/nsp1342V42VgtCgtT77C.160.007423
ORF1ab/nsp1342V42VgtCgtT77P.20.001306
ORF1ab/nsp1342V42VgtCgtT66AY.4.20.00013
ORF1ab/nsp1342V42VgtCgtT66AY.980.000474
ORF1ab/nsp1342V42VgtCgtT66AY.98.10.000291
ORF1ab/nsp1342V42VgtCgtT66B.1.177.40.001266
ORF1ab/nsp1342V42VgtCgtT66B.1.2400.001293
ORF1ab/nsp1342V42VgtCgtG350.166667
ORF1ab/nsp1342V42VgtCgtT250.111111
ORF1ab/nsp1342V42VgtCgtT55AU.20.012107
ORF1ab/nsp1342V42VgtCgtT55AY.1050.003215
ORF1ab/nsp1342V42VgtCgtT55AY.1170.000423
ORF1ab/nsp1342V42VgtCgtT55AY.1190.000177
ORF1ab/nsp1342V42VgtCgtT55AY.140.00044
ORF1ab/nsp1342V42VgtCgtT55AY.34.10.00255
ORF1ab/nsp1342V42VgtCgtT45AY.460.000416
ORF1ab/nsp1342V42VgtCgtG15AY.460.000104
ORF1ab/nsp1342V42VgtCgtT55AY.750.00028
ORF1ab/nsp1342V42VgtCgtT55B.1.258.170.00052
ORF1ab/nsp1342V42VgtCgtT55B.1.6210.000443
ORF1ab/nsp1342V42VgtCgtT44AY.340.000388
ORF1ab/nsp1342V42VgtCgtT44AY.360.000593
ORF1ab/nsp1342V42VgtCgtA44B.1.1.1410.008048
ORF1ab/nsp1342V42VgtCgtT44B.1.6280.001409
ORF1ab/nsp1342V42VgtCgtT23AY.1160.000574
ORF1ab/nsp1342V42VgtCgtA13AY.1160.000287
ORF1ab/nsp1342V42VgtCgtT33AY.450.000365
ORF1ab/nsp1342V42VgtCgtT33AY.46.10.00308
ORF1ab/nsp1342V42VgtCgtT33AY.46.40.000494
ORF1ab/nsp1342V42VgtCgtA33AY.80.001818
ORF1ab/nsp1342V42VgtCgtT33AY.820.004071
ORF1ab/nsp1342V42VgtCgtT33AY.9.10.000251
ORF1ab/nsp1342V42VgtCgtT33B.1.1.3160.002775
ORF1ab/nsp1342V42VgtCgtT33B.1.1.3180.000905
ORF1ab/nsp1342V42VgtCgtT33B.1.1.390.001529
ORF1ab/nsp1342V42VgtCgtT33B.1.2060.002447
ORF1ab/nsp1342V42VgtCgtT33B.1.4700.004213
ORF1ab/nsp1342V42VgtCgtT33B.1.5870.005693
ORF1ab/nsp1342V42VgtCgtT33B.6.60.002667
ORF1ab/nsp1342V42VgtCgtT33Q.80.000495
ORF1ab/nsp1342V42VgtCgtA22AY.1040.003968
ORF1ab/nsp1342V42VgtCgtT22AY.1060.00067
ORF1ab/nsp1342V42VgtCgtT22AY.1100.000225
ORF1ab/nsp1342V42VgtCgtA12AY.120.000316
ORF1ab/nsp1342V42VgtCgtT12AY.120.000316
ORF1ab/nsp1342V42VgtCgtT22AY.280.003781
ORF1ab/nsp1342V42VgtCgtT22AY.300.000791
ORF1ab/nsp1342V42VgtCgtT22AY.46.50.000397
ORF1ab/nsp1342V42VgtCgtT22AY.60.000082
ORF1ab/nsp1342V42VgtCgtT22AY.99.20.000184
ORF1ab/nsp1342V42VgtCgtT22B0.000256
ORF1ab/nsp1342V42VgtCgtT22B.1.1.2160.001781
ORF1ab/nsp1342V42VgtCgtT12B.1.1.250.000569
ORF1ab/nsp1342V42VgtCgtA12B.1.1.250.000569
ORF1ab/nsp1342V42VgtCgtT22B.1.1.3010.002358
ORF1ab/nsp1342V42VgtCgtT22B.1.1.3620.011236
ORF1ab/nsp1342V42VgtCgtT22B.1.1390.001466
ORF1ab/nsp1342V42VgtCgtT22B.1.177.70.00033
ORF1ab/nsp1342V42VgtCgtT22B.1.177.730.001133
ORF1ab/nsp1342V42VgtCgtT22B.1.2340.000264
ORF1ab/nsp1342V42VgtCgtT22B.1.258.110.000793
ORF1ab/nsp1342V42VgtCgtT22B.1.36.290.001035
ORF1ab/nsp1342V42VgtCgtT22B.1.3710.002245
ORF1ab/nsp1342V42VgtCgtT22B.1.5610.000794
ORF1ab/nsp1342V42VgtCgtG22B.1.6030.021277
ORF1ab/nsp1342V42VgtCgtT22N.50.003534
ORF1ab/nsp1342V42VgtCgtT22P.1.120.000968
ORF1ab/nsp1342V42VgtCgtT11A.10.000282
ORF1ab/nsp1342V42VgtCgtT11A.2.20.001689
ORF1ab/nsp1342V42VgtCgtT11A.280.002646
ORF1ab/nsp1342V42VgtCgtA11AY.100.00053
ORF1ab/nsp1342V42VgtCgtT11AY.1010.00049
ORF1ab/nsp1342V42VgtCgtT11AY.1130.000142
ORF1ab/nsp1342V42VgtCgtT11AY.1140.000231
ORF1ab/nsp1342V42VgtCgtG11AY.130.000161
ORF1ab/nsp1342V42VgtCgtA11AY.170.008197
ORF1ab/nsp1342V42VgtCgtT11AY.190.00114
ORF1ab/nsp1342V42VgtCgtT11AY.20.000356
ORF1ab/nsp1342V42VgtCgtT11AY.350.000233
ORF1ab/nsp1342V42VgtCgtT11AY.510.000909
ORF1ab/nsp1342V42VgtCgtA11AY.520.000814
ORF1ab/nsp1342V42VgtCgtT11AY.540.000095
ORF1ab/nsp1342V42VgtCgtT11AY.570.000656
ORF1ab/nsp1342V42VgtCgtA11AY.580.000907
ORF1ab/nsp1342V42VgtCgtT11AY.650.000533
ORF1ab/nsp1342V42VgtCgtG11AY.70.000196
ORF1ab/nsp1342V42VgtCgtT11AY.75.10.00018
ORF1ab/nsp1342V42VgtCgtT11AY.840.000437
ORF1ab/nsp1342V42VgtCgtG11AY.850.000427
ORF1ab/nsp1342V42VgtCgtT11AY.860.00083
ORF1ab/nsp1342V42VgtCgtA11AY.870.000833
ORF1ab/nsp1342V42VgtCgtT11AY.9.20.000037
ORF1ab/nsp1342V42VgtCgtT11AY.930.000273
ORF1ab/nsp1342V42VgtCgtA11AY.990.001049
ORF1ab/nsp1342V42VgtCgtT11AY.99.10.001553
ORF1ab/nsp1342V42VgtCgtT11AZ.50.003509
ORF1ab/nsp1342V42VgtCgtT11B.1.1.10.000327
ORF1ab/nsp1342V42VgtCgtT11B.1.1.1280.007092
ORF1ab/nsp1342V42VgtCgtT11B.1.1.1650.015385
ORF1ab/nsp1342V42VgtCgtA11B.1.1.1740.003378
ORF1ab/nsp1342V42VgtCgtT11B.1.1.2250.007194
ORF1ab/nsp1342V42VgtCgtT11B.1.1.2980.000862
ORF1ab/nsp1342V42VgtCgtT11B.1.1.3110.000358
ORF1ab/nsp1342V42VgtCgtT11B.1.1.3170.000412
ORF1ab/nsp1342V42VgtCgtT11B.1.1.3260.001761
ORF1ab/nsp1342V42VgtCgtT11B.1.1.3360.016667
ORF1ab/nsp1342V42VgtCgtT11B.1.1.3690.000446
ORF1ab/nsp1342V42VgtCgtT11B.1.1.3710.010417
ORF1ab/nsp1342V42VgtCgtT11B.1.1.4640.001473
ORF1ab/nsp1342V42VgtCgtT11B.1.1.500.000679
ORF1ab/nsp1342V42VgtCgtT11B.1.1.80.003584
ORF1ab/nsp1342V42VgtCgtT11B.1.1180.006711
ORF1ab/nsp1342V42VgtCgtT11B.1.160.260.002421
ORF1ab/nsp1342V42VgtCgtT11B.1.1700.00431
ORF1ab/nsp1342V42VgtCgtT11B.1.177.210.000076
ORF1ab/nsp1342V42VgtCgtT11B.1.177.440.000519
ORF1ab/nsp1342V42VgtCgtT11B.1.177.450.000381
ORF1ab/nsp1342V42VgtCgtT11B.1.177.540.000606
ORF1ab/nsp1342V42VgtCgtT11B.1.177.650.000665
ORF1ab/nsp1342V42VgtCgtT11B.1.177.690.001484
ORF1ab/nsp1342V42VgtCgtT11B.1.177.760.002494
ORF1ab/nsp1342V42VgtCgtT11B.1.177.810.000189
ORF1ab/nsp1342V42VgtCgtT11B.1.177.860.000183
ORF1ab/nsp1342V42VgtCgtT11B.1.2350.002519
ORF1ab/nsp1342V42VgtCgtT11B.1.258.30.001675
ORF1ab/nsp1342V42VgtCgtT11B.1.258.70.001912
ORF1ab/nsp1342V42VgtCgtT11B.1.3130.006579
ORF1ab/nsp1342V42VgtCgtT11B.1.3380.008621
ORF1ab/nsp1342V42VgtCgtT11B.1.351.30.000876
ORF1ab/nsp1342V42VgtCgtT11B.1.36.220.001208
ORF1ab/nsp1342V42VgtCgtT11B.1.36.390.002217
ORF1ab/nsp1342V42VgtCgtT11B.1.3690.000285
ORF1ab/nsp1342V42VgtCgtT11B.1.4010.008197
ORF1ab/nsp1342V42VgtCgtT11B.1.4210.007463
ORF1ab/nsp1342V42VgtCgtT11B.1.466.20.000391
ORF1ab/nsp1342V42VgtCgtT11B.1.4990.00105
ORF1ab/nsp1342V42VgtCgtT11B.1.5030.002488
ORF1ab/nsp1342V42VgtCgtT11B.1.5230.002451
ORF1ab/nsp1342V42VgtCgtT11B.1.5600.00463
ORF1ab/nsp1342V42VgtCgtT11B.1.5750.000303
ORF1ab/nsp1342V42VgtCgtT11B.1.5820.000491
ORF1ab/nsp1342V42VgtCgtT11B.1.5950.000261
ORF1ab/nsp1342V42VgtCgtT11B.1.617.10.000129
ORF1ab/nsp1342V42VgtCgtT11B.1.6190.000871
ORF1ab/nsp1342V42VgtCgtT11B.1.6200.000946
ORF1ab/nsp1342V42VgtCgtT11B.1.621.10.000506
ORF1ab/nsp1342V42VgtCgtT11B.1.6230.000536
ORF1ab/nsp1342V42VgtCgtT11B.1.6290.013333
ORF1ab/nsp1342V42VgtCgtT11B.270.015385
ORF1ab/nsp1342V42VgtCgtT11C.37.10.002618
ORF1ab/nsp1342V42VgtCgtT11D.20.000075
ORF1ab/nsp1342V42VgtCgtT11P.1.100.000269
ORF1ab/nsp1342V42VgtCgtT11P.1.160.000374
ORF1ab/nsp1342V42VgtCgtT11Q.20.000613