CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = V226V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13226V226VV5550VsyngtGgtT793877900.98135516912-16914
ORF1ab/nsp13226V226VV5550VsyngtGgtA79381430.018014616912-16914
ORF1ab/nsp13226V226VV5550VsyngtGgtC793850.00062988216912-16914

Details of the mutation V226V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13226V226VgtGgtT77907938All0.00149
ORF1ab/nsp13226V226VgtGgtA1437938All0.000027
ORF1ab/nsp13226V226VgtGgtC57938All0.000001
ORF1ab/nsp13226V226VgtGgtT40854113AY.1140.944072
ORF1ab/nsp13226V226VgtGgtA284113AY.1140.006471
ORF1ab/nsp13226V226VgtGgtT20772078AY.850.887228
ORF1ab/nsp13226V226VgtGgtA12078AY.850.000427
ORF1ab/nsp13226V226VgtGgtT294314B.1.1.70.000263
ORF1ab/nsp13226V226VgtGgtA20314B.1.1.70.000018
ORF1ab/nsp13226V226VgtGgtT256260B.1.617.20.000964
ORF1ab/nsp13226V226VgtGgtA4260B.1.617.20.000015
ORF1ab/nsp13226V226VgtGgtT155155AY.40.000241
ORF1ab/nsp13226V226VgtGgtT127130AY.430.000563
ORF1ab/nsp13226V226VgtGgtA3130AY.430.000013
ORF1ab/nsp13226V226VgtGgtT5151B.1.36.290.026384
ORF1ab/nsp13226V226VgtGgtT4343AY.440.000262
ORF1ab/nsp13226V226VgtGgtA4242B.1.177.860.007705
ORF1ab/nsp13226V226VgtGgtT3235AY.30.000318
ORF1ab/nsp13226V226VgtGgtA335AY.30.00003
ORF1ab/nsp13226V226VgtGgtT3334AY.1020.000875
ORF1ab/nsp13226V226VgtGgtA134AY.1020.000027
ORF1ab/nsp13226V226VgtGgtT3034B.10.000275
ORF1ab/nsp13226V226VgtGgtA334B.10.000027
ORF1ab/nsp13226V226VgtGgtC134B.10.000009
ORF1ab/nsp13226V226VgtGgtT2828AY.1190.000989
ORF1ab/nsp13226V226VgtGgtT2627B.1.5260.000611
ORF1ab/nsp13226V226VgtGgtA127B.1.5260.000024
ORF1ab/nsp13226V226VgtGgtT2124P.10.000331
ORF1ab/nsp13226V226VgtGgtA324P.10.000047
ORF1ab/nsp13226V226VgtGgtT2222AY.590.011653
ORF1ab/nsp13226V226VgtGgtT1921AY.1030.000118
ORF1ab/nsp13226V226VgtGgtA221AY.1030.000012
ORF1ab/nsp13226V226VgtGgtT1516AY.390.000371
ORF1ab/nsp13226V226VgtGgtA116AY.390.000025
ORF1ab/nsp13226V226VgtGgtT1515AY.1200.000558
ORF1ab/nsp13226V226VgtGgtT1515AY.46.20.00953
ORF1ab/nsp13226V226VgtGgtT1313AY.46.60.000939
ORF1ab/nsp13226V226VgtGgtT1212AY.98.10.000581
ORF1ab/nsp13226V226VgtGgtT1212B.1.10.000218
ORF1ab/nsp13226V226VgtGgtT1212B.1.2580.000799
ORF1ab/nsp13226V226VgtGgtT1212B.1.564.10.018927
ORF1ab/nsp13226V226VgtGgtT1111AY.1170.00093
ORF1ab/nsp13226V226VgtGgtT1011AY.260.000283
ORF1ab/nsp13226V226VgtGgtA111AY.260.000028
ORF1ab/nsp13226V226VgtGgtT1111Q.30.001595
ORF1ab/nsp13226V226VgtGgtT1010AY.420.000402
ORF1ab/nsp13226V226VgtGgtT1010AY.610.001048
ORF1ab/nsp13226V226VgtGgtT1010B.1.1600.000312
ORF1ab/nsp13226V226VgtGgtT99AY.230.000628
ORF1ab/nsp13226V226VgtGgtT99AY.50.000186
ORF1ab/nsp13226V226VgtGgtT99AY.9.10.000754
ORF1ab/nsp13226V226VgtGgtT99B.1.1770.000119
ORF1ab/nsp13226V226VgtGgtT99B.1.177.770.006536
ORF1ab/nsp13226V226VgtGgtT88AY.5.30.002699
ORF1ab/nsp13226V226VgtGgtT68B.1.20.000053
ORF1ab/nsp13226V226VgtGgtA18B.1.20.000009
ORF1ab/nsp13226V226VgtGgtC18B.1.20.000009
ORF1ab/nsp13226V226VgtGgtT88B.1.4290.000188
ORF1ab/nsp13226V226VgtGgtT77AY.630.002708
ORF1ab/nsp13226V226VgtGgtT77AY.920.002011
ORF1ab/nsp13226V226VgtGgtT57B.1.1.5190.000199
ORF1ab/nsp13226V226VgtGgtA17B.1.1.5190.00004
ORF1ab/nsp13226V226VgtGgtC17B.1.1.5190.00004
ORF1ab/nsp13226V226VgtGgtA47B.1.360.000584
ORF1ab/nsp13226V226VgtGgtT37B.1.360.000438
ORF1ab/nsp13226V226VgtGgtT66AY.160.002278
ORF1ab/nsp13226V226VgtGgtT66AY.270.000388
ORF1ab/nsp13226V226VgtGgtT56AY.300.001979
ORF1ab/nsp13226V226VgtGgtA16AY.300.000396
ORF1ab/nsp13226V226VgtGgtT66B.1.1.2840.000644
ORF1ab/nsp13226V226VgtGgtT55AY.16.10.00235
ORF1ab/nsp13226V226VgtGgtT45AY.290.000063
ORF1ab/nsp13226V226VgtGgtA15AY.290.000016
ORF1ab/nsp13226V226VgtGgtT55AY.360.000741
ORF1ab/nsp13226V226VgtGgtA35AY.60.000123
ORF1ab/nsp13226V226VgtGgtT25AY.60.000082
ORF1ab/nsp13226V226VgtGgtT35AY.840.001312
ORF1ab/nsp13226V226VgtGgtC15AY.840.000437
ORF1ab/nsp13226V226VgtGgtA15AY.840.000437
ORF1ab/nsp13226V226VgtGgtT55B.1.36.80.005
ORF1ab/nsp13226V226VgtGgtT55B.1.5950.001305
ORF1ab/nsp13226V226VgtGgtT45C.370.000464
ORF1ab/nsp13226V226VgtGgtA15C.370.000116
ORF1ab/nsp13226V226VgtGgtT44AY.1100.000451
ORF1ab/nsp13226V226VgtGgtT44AY.330.000267
ORF1ab/nsp13226V226VgtGgtT44AY.450.000487
ORF1ab/nsp13226V226VgtGgtT44AY.460.000416
ORF1ab/nsp13226V226VgtGgtT44AY.520.003257
ORF1ab/nsp13226V226VgtGgtT44AY.650.002132
ORF1ab/nsp13226V226VgtGgtT44AY.980.000316
ORF1ab/nsp13226V226VgtGgtT44B.1.1.3390.042105
ORF1ab/nsp13226V226VgtGgtT44B.1.2210.000284
ORF1ab/nsp13226V226VgtGgtT34B.1.3510.000089
ORF1ab/nsp13226V226VgtGgtA14B.1.3510.00003
ORF1ab/nsp13226V226VgtGgtT230.111111
ORF1ab/nsp13226V226VgtGgtA130.055556
ORF1ab/nsp13226V226VgtGgtT33AY.110.004016
ORF1ab/nsp13226V226VgtGgtT33AY.200.000117
ORF1ab/nsp13226V226VgtGgtT23AY.250.000012
ORF1ab/nsp13226V226VgtGgtA13AY.250.000006
ORF1ab/nsp13226V226VgtGgtT33AY.3.10.000256
ORF1ab/nsp13226V226VgtGgtT33AY.4.2.10.000447
ORF1ab/nsp13226V226VgtGgtT33AY.470.000093
ORF1ab/nsp13226V226VgtGgtT33AY.550.002752
ORF1ab/nsp13226V226VgtGgtT33AY.640.001786
ORF1ab/nsp13226V226VgtGgtT23AY.7.10.000225
ORF1ab/nsp13226V226VgtGgtA13AY.7.10.000113
ORF1ab/nsp13226V226VgtGgtT23AY.9.20.000073
ORF1ab/nsp13226V226VgtGgtA13AY.9.20.000037
ORF1ab/nsp13226V226VgtGgtT33AZ.20.002463
ORF1ab/nsp13226V226VgtGgtT33B.1.110.30.002155
ORF1ab/nsp13226V226VgtGgtT33B.1.4270.000151
ORF1ab/nsp13226V226VgtGgtT22AY.100.00106
ORF1ab/nsp13226V226VgtGgtT22AY.1000.000092
ORF1ab/nsp13226V226VgtGgtT22AY.1060.00067
ORF1ab/nsp13226V226VgtGgtT22AY.1130.000285
ORF1ab/nsp13226V226VgtGgtT22AY.1160.000574
ORF1ab/nsp13226V226VgtGgtT22AY.1180.000125
ORF1ab/nsp13226V226VgtGgtT22AY.340.000194
ORF1ab/nsp13226V226VgtGgtT22AY.39.10.000079
ORF1ab/nsp13226V226VgtGgtT22AY.4.20.000043
ORF1ab/nsp13226V226VgtGgtT22AY.410.000588
ORF1ab/nsp13226V226VgtGgtT22AY.540.000191
ORF1ab/nsp13226V226VgtGgtT22AY.710.00095
ORF1ab/nsp13226V226VgtGgtT22AY.750.000112
ORF1ab/nsp13226V226VgtGgtT22AY.75.10.000361
ORF1ab/nsp13226V226VgtGgtT22AY.820.002714
ORF1ab/nsp13226V226VgtGgtT22B.1.1.1210.004854
ORF1ab/nsp13226V226VgtGgtT22B.1.1.1480.017544
ORF1ab/nsp13226V226VgtGgtT22B.1.1.2220.000408
ORF1ab/nsp13226V226VgtGgtT22B.1.1.4320.002532
ORF1ab/nsp13226V226VgtGgtT22B.1.177.490.074074
ORF1ab/nsp13226V226VgtGgtT22B.1.2340.000264
ORF1ab/nsp13226V226VgtGgtA12B.1.4700.001404
ORF1ab/nsp13226V226VgtGgtT12B.1.4700.001404
ORF1ab/nsp13226V226VgtGgtT22B.1.617.10.000258
ORF1ab/nsp13226V226VgtGgtT22B.1.6210.000177
ORF1ab/nsp13226V226VgtGgtT22B.1.6370.000146
ORF1ab/nsp13226V226VgtGgtT22R.10.00018
ORF1ab/nsp13226V226VgtGgtT11A0.000387
ORF1ab/nsp13226V226VgtGgtT11AE.80.000489
ORF1ab/nsp13226V226VgtGgtT11AY.1080.001103
ORF1ab/nsp13226V226VgtGgtT11AY.1090.00074
ORF1ab/nsp13226V226VgtGgtT11AY.120.2.10.000498
ORF1ab/nsp13226V226VgtGgtT11AY.1210.000135
ORF1ab/nsp13226V226VgtGgtT11AY.320.000532
ORF1ab/nsp13226V226VgtGgtT11AY.34.10.00051
ORF1ab/nsp13226V226VgtGgtT11AY.380.000499
ORF1ab/nsp13226V226VgtGgtT11AY.4.50.000107
ORF1ab/nsp13226V226VgtGgtT11AY.46.40.000165
ORF1ab/nsp13226V226VgtGgtT11AY.560.001605
ORF1ab/nsp13226V226VgtGgtA11AY.570.000656
ORF1ab/nsp13226V226VgtGgtT11AY.620.000436
ORF1ab/nsp13226V226VgtGgtT11AY.690.000187
ORF1ab/nsp13226V226VgtGgtT11AY.720.001361
ORF1ab/nsp13226V226VgtGgtT11AY.730.000665
ORF1ab/nsp13226V226VgtGgtT11AY.870.000833
ORF1ab/nsp13226V226VgtGgtT11AY.910.00073
ORF1ab/nsp13226V226VgtGgtT11AY.930.000273
ORF1ab/nsp13226V226VgtGgtT11B.1.1.120.007463
ORF1ab/nsp13226V226VgtGgtT11B.1.1.1640.005155
ORF1ab/nsp13226V226VgtGgtT11B.1.1.250.000569
ORF1ab/nsp13226V226VgtGgtT11B.1.1.3260.001761
ORF1ab/nsp13226V226VgtGgtA11B.1.1.3420.0625
ORF1ab/nsp13226V226VgtGgtT11B.1.1.3540.004386
ORF1ab/nsp13226V226VgtGgtT11B.1.1.3690.000446
ORF1ab/nsp13226V226VgtGgtT11B.1.1.3910.008547
ORF1ab/nsp13226V226VgtGgtA11B.1.1.4480.002033
ORF1ab/nsp13226V226VgtGgtT11B.1.1110.001175
ORF1ab/nsp13226V226VgtGgtT11B.1.177.320.00135
ORF1ab/nsp13226V226VgtGgtA11B.1.177.350.000691
ORF1ab/nsp13226V226VgtGgtT11B.1.177.440.000519
ORF1ab/nsp13226V226VgtGgtT11B.1.177.530.002392
ORF1ab/nsp13226V226VgtGgtT11B.1.177.580.001332
ORF1ab/nsp13226V226VgtGgtT11B.1.2360.002053
ORF1ab/nsp13226V226VgtGgtT11B.1.2400.000216
ORF1ab/nsp13226V226VgtGgtT11B.1.2430.00007
ORF1ab/nsp13226V226VgtGgtT11B.1.2650.001271
ORF1ab/nsp13226V226VgtGgtT11B.1.3150.006061
ORF1ab/nsp13226V226VgtGgtT11B.1.3560.001727
ORF1ab/nsp13226V226VgtGgtT11B.1.36.220.001208
ORF1ab/nsp13226V226VgtGgtT11B.1.36.380.001642
ORF1ab/nsp13226V226VgtGgtA11B.1.3620.001541
ORF1ab/nsp13226V226VgtGgtA11B.1.3670.000792
ORF1ab/nsp13226V226VgtGgtT11B.1.4560.003268
ORF1ab/nsp13226V226VgtGgtA11B.1.4590.004082
ORF1ab/nsp13226V226VgtGgtT11B.1.4960.125
ORF1ab/nsp13226V226VgtGgtT11B.1.4970.000315
ORF1ab/nsp13226V226VgtGgtT11B.1.5250.000113
ORF1ab/nsp13226V226VgtGgtT11B.1.5960.000087
ORF1ab/nsp13226V226VgtGgtA11B.1.6290.013333
ORF1ab/nsp13226V226VgtGgtT11C.160.00106
ORF1ab/nsp13226V226VgtGgtT11D.20.000075
ORF1ab/nsp13226V226VgtGgtA11N.30.005814
ORF1ab/nsp13226V226VgtGgtT11N.60.007092
ORF1ab/nsp13226V226VgtGgtA11P.1.120.000484
ORF1ab/nsp13226V226VgtGgtT11P.1.150.000232
ORF1ab/nsp13226V226VgtGgtA11P.20.000187
ORF1ab/nsp13226V226VgtGgtT11Q.10.000126
ORF1ab/nsp13226V226VgtGgtC11Q.80.000165
ORF1ab/nsp13226V226VgtGgtT11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.