CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = V193V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13193V193VV5517VsyngtAgtG100830.8316813-16815
ORF1ab/nsp13193V193VV5517VsyngtAgtC100110.1116813-16815
ORF1ab/nsp13193V193VV5517VsyngtAgtT10060.0616813-16815

Details of the mutation V193V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13193V193VgtAgtG83100All0.000016
ORF1ab/nsp13193V193VgtAgtC11100All0.000002
ORF1ab/nsp13193V193VgtAgtT6100All0.000001
ORF1ab/nsp13193V193VgtAgtG1819B.1.1.70.000016
ORF1ab/nsp13193V193VgtAgtC119B.1.1.70.000001
ORF1ab/nsp13193V193VgtAgtG99AY.30.00009
ORF1ab/nsp13193V193VgtAgtG99B.1.617.20.000034
ORF1ab/nsp13193V193VgtAgtC37B.10.000027
ORF1ab/nsp13193V193VgtAgtG37B.10.000027
ORF1ab/nsp13193V193VgtAgtT17B.10.000009
ORF1ab/nsp13193V193VgtAgtG56AY.40.000008
ORF1ab/nsp13193V193VgtAgtC16AY.40.000002
ORF1ab/nsp13193V193VgtAgtG55AY.9.20.000184
ORF1ab/nsp13193V193VgtAgtC55B.1.617.10.000645
ORF1ab/nsp13193V193VgtAgtG33AY.98.10.000145
ORF1ab/nsp13193V193VgtAgtG33B0.000383
ORF1ab/nsp13193V193VgtAgtG33B.1.1.1650.046154
ORF1ab/nsp13193V193VgtAgtG33B.1.36.360.001806
ORF1ab/nsp13193V193VgtAgtG23P.10.000032
ORF1ab/nsp13193V193VgtAgtC13P.10.000016
ORF1ab/nsp13193V193VgtAgtG22AY.440.000012
ORF1ab/nsp13193V193VgtAgtG22B.1.4290.000047
ORF1ab/nsp13193V193VgtAgtT22B.1.5260.000047
ORF1ab/nsp13193V193VgtAgtG11AY.1000.000046
ORF1ab/nsp13193V193VgtAgtG11AY.250.000006
ORF1ab/nsp13193V193VgtAgtG11AY.290.000016
ORF1ab/nsp13193V193VgtAgtT11AY.39.10.00004
ORF1ab/nsp13193V193VgtAgtG11AY.430.000004
ORF1ab/nsp13193V193VgtAgtG11AY.550.000917
ORF1ab/nsp13193V193VgtAgtG11AY.980.000079
ORF1ab/nsp13193V193VgtAgtG11AY.99.20.000092
ORF1ab/nsp13193V193VgtAgtT11B.1.10.000018
ORF1ab/nsp13193V193VgtAgtG11B.1.1.2140.000055
ORF1ab/nsp13193V193VgtAgtT11B.1.1.4090.002833
ORF1ab/nsp13193V193VgtAgtG11B.1.1600.000031
ORF1ab/nsp13193V193VgtAgtG11B.1.177.180.00116
ORF1ab/nsp13193V193VgtAgtG11B.1.351.20.000303
ORF1ab/nsp13193V193VgtAgtG11B.1.4270.00005
ORF1ab/nsp13193V193VgtAgtG11P.1.10.000318
ORF1ab/nsp13193V193VgtAgtG11P.1.140.000048
ORF1ab/nsp13193V193VgtAgtG11P.1.90.004808
ORF1ab/nsp13193V193VgtAgtG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.