CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 193 | V193L | V5517L | nonsyn | Gta | Tta | 1052 | 1044 | 0.992395 | 16813-16815 |
ORF1ab/nsp13 | 193 | V193L | V5517L | nonsyn | Gta | Cta | 1052 | 7 | 0.00665399 | 16813-16815 |
ORF1ab/nsp13 | 193 | V193L | V5517L | nonsyn | GtA | CtT | 1052 | 1 | 0.00095057 | 16813-16815 |
Details of the mutation V193L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1044 | 1052 | All | 0.0002 |
ORF1ab/nsp13 | 193 | V193L | Gta | Cta | 7 | 1052 | All | 0.000001 |
ORF1ab/nsp13 | 193 | V193L | GtA | CtT | 1 | 1052 | All | 0 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 412 | 415 | B.1.1.7 | 0.000369 |
ORF1ab/nsp13 | 193 | V193L | Gta | Cta | 3 | 415 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 132 | 133 | B.1 | 0.001209 |
ORF1ab/nsp13 | 193 | V193L | Gta | Cta | 1 | 133 | B.1 | 0.000009 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 56 | 56 | B.1.160 | 0.001747 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 44 | 44 | B.1.258 | 0.002928 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 33 | 33 | AY.4 | 0.000051 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 25 | 25 | B.1.234 | 0.003299 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 23 | 23 | AY.117 | 0.001944 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 17 | 18 | B.1.2 | 0.00015 |
ORF1ab/nsp13 | 193 | V193L | Gta | Cta | 1 | 18 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 14 | 14 | B.1.177.46 | 0.012856 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 9 | 9 | Q.3 | 0.001305 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 9 | 9 | Q.8 | 0.001484 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 6 | 8 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 193 | V193L | GtA | CtT | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 193 | V193L | Gta | Cta | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 8 | 8 | B.1.575 | 0.002427 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | B.1.1.242 | 0.173913 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 3 | 3 | B.1.425 | 0.008982 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp13 | 193 | V193L | Gta | Cta | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 193 | V193L | Gta | Tta | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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