CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = T599I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13599T599IT5923InonsynaCtaTt810881030.99938318031-18033
ORF1ab/nsp13599T599IT5923InonsynaCTaTC810850.00061667518031-18033

Details of the mutation T599I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13599T599IaCtaTt81038108All0.00155
ORF1ab/nsp13599T599IaCTaTC58108All0.000001
ORF1ab/nsp13599T599IaCtaTt20062006AY.40.003122
ORF1ab/nsp13599T599IaCtaTt12411241B.1.617.20.004673
ORF1ab/nsp13599T599IaCtaTt10541059B.1.1.70.000944
ORF1ab/nsp13599T599IaCTaTC51059B.1.1.70.000004
ORF1ab/nsp13599T599IaCtaTt482482B.1.1.3021
ORF1ab/nsp13599T599IaCtaTt361361B.1.1.3030.997238
ORF1ab/nsp13599T599IaCtaTt281281B.1.466.20.109937
ORF1ab/nsp13599T599IaCtaTt200200AY.1020.005303
ORF1ab/nsp13599T599IaCtaTt186186B.1.5260.004372
ORF1ab/nsp13599T599IaCtaTt176176AY.4.50.018919
ORF1ab/nsp13599T599IaCtaTt162162AY.1030.001006
ORF1ab/nsp13599T599IaCtaTt110110B.1.1600.003431
ORF1ab/nsp13599T599IaCtaTt9898P.10.001544
ORF1ab/nsp13599T599IaCtaTt8787B.10.000797
ORF1ab/nsp13599T599IaCtaTt8787B.1.20.000766
ORF1ab/nsp13599T599IaCtaTt7777B.1.3510.002289
ORF1ab/nsp13599T599IaCtaTt7070AY.390.00173
ORF1ab/nsp13599T599IaCtaTt6969AY.440.00042
ORF1ab/nsp13599T599IaCtaTt6868AY.750.00381
ORF1ab/nsp13599T599IaCtaTt6565B.1.10.001179
ORF1ab/nsp13599T599IaCtaTt6565B.1.4270.003282
ORF1ab/nsp13599T599IaCtaTt5555AY.430.000244
ORF1ab/nsp13599T599IaCtaTt5050P.1.100.013473
ORF1ab/nsp13599T599IaCtaTt4848AY.290.000757
ORF1ab/nsp13599T599IaCtaTt4747B.1.4290.001106
ORF1ab/nsp13599T599IaCtaTt3636AY.260.001019
ORF1ab/nsp13599T599IaCtaTt3535AY.1200.001301
ORF1ab/nsp13599T599IaCtaTt3535B.1.1.3690.015618
ORF1ab/nsp13599T599IaCtaTt3232AY.200.001244
ORF1ab/nsp13599T599IaCtaTt3232AY.230.002232
ORF1ab/nsp13599T599IaCtaTt3030B.1.5170.01281
ORF1ab/nsp13599T599IaCtaTt2929C.370.003366
ORF1ab/nsp13599T599IaCtaTt2828A.23.10.019718
ORF1ab/nsp13599T599IaCtaTt2828AY.30.000278
ORF1ab/nsp13599T599IaCtaTt2727B.1.1770.000356
ORF1ab/nsp13599T599IaCtaTt2626B.1.2580.00173
ORF1ab/nsp13599T599IaCtaTt2525AY.250.00015
ORF1ab/nsp13599T599IaCtaTt2323AY.90.001555
ORF1ab/nsp13599T599IaCtaTt1919AY.420.000764
ORF1ab/nsp13599T599IaCtaTt1818AY.1000.000828
ORF1ab/nsp13599T599IaCtaTt1818B.1.36.220.021739
ORF1ab/nsp13599T599IaCtaTt1616AY.730.010645
ORF1ab/nsp13599T599IaCtaTt1515P.1.140.000717
ORF1ab/nsp13599T599IaCtaTt1414AY.4.20.000304
ORF1ab/nsp13599T599IaCtaTt1313B.1.36.290.006725
ORF1ab/nsp13599T599IaCtaTt1212B.1.5250.001358
ORF1ab/nsp13599T599IaCtaTt1212B.1.6370.000877
ORF1ab/nsp13599T599IaCtaTt1111AY.1130.001566
ORF1ab/nsp13599T599IaCtaTt1111AY.39.10.000436
ORF1ab/nsp13599T599IaCtaTt1010B.1.3960.007057
ORF1ab/nsp13599T599IaCtaTt99AY.1190.000318
ORF1ab/nsp13599T599IaCtaTt99AY.330.000601
ORF1ab/nsp13599T599IaCtaTt99AY.50.000186
ORF1ab/nsp13599T599IaCtaTt88B.1.1.5190.000318
ORF1ab/nsp13599T599IaCtaTt88B.1.177.860.001468
ORF1ab/nsp13599T599IaCtaTt77AY.1170.000592
ORF1ab/nsp13599T599IaCtaTt77AY.7.20.003915
ORF1ab/nsp13599T599IaCtaTt77B.1.1.4240.318182
ORF1ab/nsp13599T599IaCtaTt77B.1.4360.007202
ORF1ab/nsp13599T599IaCtaTt66A0.002322
ORF1ab/nsp13599T599IaCtaTt66AY.130.000966
ORF1ab/nsp13599T599IaCtaTt66AY.370.001896
ORF1ab/nsp13599T599IaCtaTt66AY.4.10.004425
ORF1ab/nsp13599T599IaCtaTt66AY.60.000247
ORF1ab/nsp13599T599IaCtaTt66P.20.00112
ORF1ab/nsp13599T599IaCtaTt55AY.1180.000313
ORF1ab/nsp13599T599IaCtaTt55AY.1210.000677
ORF1ab/nsp13599T599IaCtaTt55AY.140.00044
ORF1ab/nsp13599T599IaCtaTt55AY.450.000608
ORF1ab/nsp13599T599IaCtaTt55B.1.1.2220.00102
ORF1ab/nsp13599T599IaCtaTt55B.1.1.3170.002058
ORF1ab/nsp13599T599IaCtaTt55B.1.177.600.001092
ORF1ab/nsp13599T599IaCtaTt55B.1.36.170.00247
ORF1ab/nsp13599T599IaCtaTt55B.1.4780.058824
ORF1ab/nsp13599T599IaCtaTt55B.1.6090.002397
ORF1ab/nsp13599T599IaCtaTt44AY.3.10.000341
ORF1ab/nsp13599T599IaCtaTt44AY.340.000388
ORF1ab/nsp13599T599IaCtaTt44AY.460.000416
ORF1ab/nsp13599T599IaCtaTt44AY.5.40.001107
ORF1ab/nsp13599T599IaCtaTt44AY.9.20.000147
ORF1ab/nsp13599T599IaCtaTt44B.1.2210.000284
ORF1ab/nsp13599T599IaCtaTt44B.1.36.10.004561
ORF1ab/nsp13599T599IaCtaTt44B.1.4690.01444
ORF1ab/nsp13599T599IaCtaTt44B.1.617.10.000516
ORF1ab/nsp13599T599IaCtaTt44C.350.003096
ORF1ab/nsp13599T599IaCtaTt44P.1.70.001277
ORF1ab/nsp13599T599IaCtaTt33AY.1150.015625
ORF1ab/nsp13599T599IaCtaTt33AY.4.40.001227
ORF1ab/nsp13599T599IaCtaTt33AY.620.001307
ORF1ab/nsp13599T599IaCtaTt33AY.710.001425
ORF1ab/nsp13599T599IaCtaTt33AY.780.004622
ORF1ab/nsp13599T599IaCtaTt33B0.000383
ORF1ab/nsp13599T599IaCtaTt33B.1.1.280.000934
ORF1ab/nsp13599T599IaCtaTt33B.1.160.90.021583
ORF1ab/nsp13599T599IaCtaTt33B.1.177.210.000229
ORF1ab/nsp13599T599IaCtaTt33B.1.2430.000209
ORF1ab/nsp13599T599IaCtaTt33B.1.36.80.003
ORF1ab/nsp13599T599IaCtaTt33B.1.4620.021739
ORF1ab/nsp13599T599IaCtaTt33B.1.5950.000783
ORF1ab/nsp13599T599IaCtaTt33B.1.6210.000266
ORF1ab/nsp13599T599IaCtaTt33C.36.30.001702
ORF1ab/nsp13599T599IaCtaTt33L.30.010638
ORF1ab/nsp13599T599IaCtaTt33P.1.20.003468
ORF1ab/nsp13599T599IaCtaTt33Q.10.000379
ORF1ab/nsp13599T599IaCtaTt22AY.160.000759
ORF1ab/nsp13599T599IaCtaTt22AY.270.000129
ORF1ab/nsp13599T599IaCtaTt22AY.360.000296
ORF1ab/nsp13599T599IaCtaTt22AY.39.20.003082
ORF1ab/nsp13599T599IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp13599T599IaCtaTt22AY.46.40.000329
ORF1ab/nsp13599T599IaCtaTt22AY.590.001059
ORF1ab/nsp13599T599IaCtaTt22AY.610.00021
ORF1ab/nsp13599T599IaCtaTt22AY.740.000231
ORF1ab/nsp13599T599IaCtaTt22AY.75.10.000361
ORF1ab/nsp13599T599IaCtaTt22AY.980.000158
ORF1ab/nsp13599T599IaCtaTt22AY.98.10.000097
ORF1ab/nsp13599T599IaCtaTt22AY.99.20.000184
ORF1ab/nsp13599T599IaCtaTt22B.1.1.1760.000879
ORF1ab/nsp13599T599IaCtaTt22B.1.1.3060.000877
ORF1ab/nsp13599T599IaCtaTt22B.1.1.4850.033333
ORF1ab/nsp13599T599IaCtaTt22B.1.160.230.009662
ORF1ab/nsp13599T599IaCtaTt22B.1.177.150.001262
ORF1ab/nsp13599T599IaCtaTt22B.1.177.60.001953
ORF1ab/nsp13599T599IaCtaTt22B.1.177.730.001133
ORF1ab/nsp13599T599IaCtaTt22B.1.2340.000264
ORF1ab/nsp13599T599IaCtaTt22B.1.2980.004228
ORF1ab/nsp13599T599IaCtaTt22B.1.3460.002621
ORF1ab/nsp13599T599IaCtaTt22B.1.3690.00057
ORF1ab/nsp13599T599IaCtaTt22B.1.3750.001639
ORF1ab/nsp13599T599IaCtaTt22B.1.3990.003868
ORF1ab/nsp13599T599IaCtaTt22B.1.438.10.000215
ORF1ab/nsp13599T599IaCtaTt22B.1.5510.002581
ORF1ab/nsp13599T599IaCtaTt22B.1.5960.000174
ORF1ab/nsp13599T599IaCtaTt22B.40.004415
ORF1ab/nsp13599T599IaCtaTt22D.20.00015
ORF1ab/nsp13599T599IaCtaTt22P.1.120.000968
ORF1ab/nsp13599T599IaCtaTt22P.1.160.000748
ORF1ab/nsp13599T599IaCtaTt22P.1.170.000324
ORF1ab/nsp13599T599IaCtaTt11AY.1090.00074
ORF1ab/nsp13599T599IaCtaTt11AY.1140.000231
ORF1ab/nsp13599T599IaCtaTt11AY.1160.000287
ORF1ab/nsp13599T599IaCtaTt11AY.23.10.000417
ORF1ab/nsp13599T599IaCtaTt11AY.29.10.000221
ORF1ab/nsp13599T599IaCtaTt11AY.320.000532
ORF1ab/nsp13599T599IaCtaTt11AY.34.10.00051
ORF1ab/nsp13599T599IaCtaTt11AY.400.000964
ORF1ab/nsp13599T599IaCtaTt11AY.46.10.001027
ORF1ab/nsp13599T599IaCtaTt11AY.46.60.000072
ORF1ab/nsp13599T599IaCtaTt11AY.470.000031
ORF1ab/nsp13599T599IaCtaTt11AY.5.30.000337
ORF1ab/nsp13599T599IaCtaTt11AY.500.000799
ORF1ab/nsp13599T599IaCtaTt11AY.510.000909
ORF1ab/nsp13599T599IaCtaTt11AY.540.000095
ORF1ab/nsp13599T599IaCtaTt11AY.550.000917
ORF1ab/nsp13599T599IaCtaTt11AY.690.000187
ORF1ab/nsp13599T599IaCtaTt11AY.7.10.000113
ORF1ab/nsp13599T599IaCtaTt11AY.840.000437
ORF1ab/nsp13599T599IaCtaTt11AY.930.000273
ORF1ab/nsp13599T599IaCtaTt11AY.970.001701
ORF1ab/nsp13599T599IaCtaTt11AY.99.10.001553
ORF1ab/nsp13599T599IaCtaTt11B.1.1.10.000327
ORF1ab/nsp13599T599IaCtaTt11B.1.1.1170.009709
ORF1ab/nsp13599T599IaCtaTt11B.1.1.120.007463
ORF1ab/nsp13599T599IaCtaTt11B.1.1.1380.006061
ORF1ab/nsp13599T599IaCtaTt11B.1.1.1890.001513
ORF1ab/nsp13599T599IaCtaTt11B.1.1.250.000569
ORF1ab/nsp13599T599IaCtaTt11B.1.1.3040.002809
ORF1ab/nsp13599T599IaCtaTt11B.1.1.3370.003597
ORF1ab/nsp13599T599IaCtaTt11B.1.1.500.000679
ORF1ab/nsp13599T599IaCtaTt11B.1.1.5260.003546
ORF1ab/nsp13599T599IaCtaTt11B.1.1.700.000341
ORF1ab/nsp13599T599IaCtaTt11B.1.1.720.030303
ORF1ab/nsp13599T599IaCtaTt11B.1.130.002375
ORF1ab/nsp13599T599IaCtaTt11B.1.1470.000756
ORF1ab/nsp13599T599IaCtaTt11B.1.1660.008475
ORF1ab/nsp13599T599IaCtaTt11B.1.177.120.000152
ORF1ab/nsp13599T599IaCtaTt11B.1.177.190.001431
ORF1ab/nsp13599T599IaCtaTt11B.1.177.40.000211
ORF1ab/nsp13599T599IaCtaTt11B.1.177.510.004566
ORF1ab/nsp13599T599IaCtaTt11B.1.177.570.000281
ORF1ab/nsp13599T599IaCtaTt11B.1.177.800.001912
ORF1ab/nsp13599T599IaCtaTt11B.1.177.810.000189
ORF1ab/nsp13599T599IaCtaTt11B.1.177.820.000477
ORF1ab/nsp13599T599IaCtaTt11B.1.1890.004292
ORF1ab/nsp13599T599IaCtaTt11B.1.214.10.02
ORF1ab/nsp13599T599IaCtaTt11B.1.2180.005155
ORF1ab/nsp13599T599IaCtaTt11B.1.2360.002053
ORF1ab/nsp13599T599IaCtaTt11B.1.2400.000216
ORF1ab/nsp13599T599IaCtaTt11B.1.2410.000812
ORF1ab/nsp13599T599IaCtaTt11B.1.258.110.000396
ORF1ab/nsp13599T599IaCtaTt11B.1.258.170.000104
ORF1ab/nsp13599T599IaCtaTt11B.1.258.30.001675
ORF1ab/nsp13599T599IaCtaTt11B.1.3380.008621
ORF1ab/nsp13599T599IaCtaTt11B.1.351.30.000876
ORF1ab/nsp13599T599IaCtaTt11B.1.360.000146
ORF1ab/nsp13599T599IaCtaTt11B.1.36.210.00216
ORF1ab/nsp13599T599IaCtaTt11B.1.36.260.002857
ORF1ab/nsp13599T599IaCtaTt11B.1.36.390.002217
ORF1ab/nsp13599T599IaCtaTt11B.1.3890.001002
ORF1ab/nsp13599T599IaCtaTt11B.1.3950.007042
ORF1ab/nsp13599T599IaCtaTt11B.1.3970.004854
ORF1ab/nsp13599T599IaCtaTt11B.1.4000.000429
ORF1ab/nsp13599T599IaCtaTt11B.1.4530.003236
ORF1ab/nsp13599T599IaCtaTt11B.1.4590.004082
ORF1ab/nsp13599T599IaCtaTt11B.1.4760.1
ORF1ab/nsp13599T599IaCtaTt11B.1.5610.000397
ORF1ab/nsp13599T599IaCtaTt11B.1.5640.000426
ORF1ab/nsp13599T599IaCtaTt11B.1.5740.002151
ORF1ab/nsp13599T599IaCtaTt11B.1.6120.002653
ORF1ab/nsp13599T599IaCtaTt11B.1.619.10.000641
ORF1ab/nsp13599T599IaCtaTt11B.1.6280.000352
ORF1ab/nsp13599T599IaCtaTt11B.1.930.000934
ORF1ab/nsp13599T599IaCtaTt11B.400.000364
ORF1ab/nsp13599T599IaCtaTt11C.160.00106
ORF1ab/nsp13599T599IaCtaTt11C.360.000911
ORF1ab/nsp13599T599IaCtaTt11N.40.004255
ORF1ab/nsp13599T599IaCtaTt11P.1.150.000232
ORF1ab/nsp13599T599IaCtaTt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.