CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 255 | T255I | T5579I | nonsyn | aCa | aTa | 650 | 649 | 0.998462 | 16999-17001 |
ORF1ab/nsp13 | 255 | T255I | T5579I | nonsyn | aCA | aTT | 650 | 1 | 0.00153846 | 16999-17001 |
Details of the mutation T255I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 649 | 650 | All | 0.000124 |
ORF1ab/nsp13 | 255 | T255I | aCA | aTT | 1 | 650 | All | 0 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 195 | 195 | B.1.160.30 | 0.580357 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 62 | 62 | B.1.1.7 | 0.000056 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 45 | 45 | B.1.1.519 | 0.001787 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 17 | 17 | AY.46.4 | 0.002797 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 6 | 6 | B.1.471 | 0.016393 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 3 | 3 | B | 0.000383 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 255 | T255I | aCA | aTT | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | B.1.36.34 | 0.042553 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.277 | 0.02381 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 255 | T255I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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