CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = T199del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13199T199del2T5523del2delACc--c520.416831-16833
ORF1ab/nsp13199T199del2T5523del2delACC--T520.416831-16833
ORF1ab/nsp13199T199del2T5523del2delaCCa--510.216831-16833

Details of the mutation T199del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13199T199del2ACc--c25All0
ORF1ab/nsp13199T199del2ACC--T25All0
ORF1ab/nsp13199T199del2aCCa--15All0
ORF1ab/nsp13199T199del2ACC--T220.111111
ORF1ab/nsp13199T199del2ACc--c11AY.9.20.000037
ORF1ab/nsp13199T199del2ACc--c11B.1.1.70.000001
ORF1ab/nsp13199T199del2aCCa--11B.1.617.20.000004