CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = T199del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13199T199delT5523deldelACC---4242116831-16833

Details of the mutation T199del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13199T199delACC---4242All0.000008
ORF1ab/nsp13199T199delACC---1313B.1.1.70.000012
ORF1ab/nsp13199T199delACC---33AY.40.000005
ORF1ab/nsp13199T199delACC---33B.10.000027
ORF1ab/nsp13199T199delACC---33B.1.20.000026
ORF1ab/nsp13199T199delACC---22B.1.1770.000026
ORF1ab/nsp13199T199delACC---22B.1.617.20.000008
ORF1ab/nsp13199T199delACC---11AY.1080.001103
ORF1ab/nsp13199T199delACC---11AY.1110.000183
ORF1ab/nsp13199T199delACC---11AY.1200.000037
ORF1ab/nsp13199T199delACC---11AY.4.50.000107
ORF1ab/nsp13199T199delACC---11AY.430.000004
ORF1ab/nsp13199T199delACC---11AY.520.000814
ORF1ab/nsp13199T199delACC---11AY.670.000464
ORF1ab/nsp13199T199delACC---11AY.680.000274
ORF1ab/nsp13199T199delACC---11AY.720.001361
ORF1ab/nsp13199T199delACC---11AY.90.000068
ORF1ab/nsp13199T199delACC---11B.1.10.000018
ORF1ab/nsp13199T199delACC---11B.1.1.1390.022727
ORF1ab/nsp13199T199delACC---11B.1.1.4480.002033
ORF1ab/nsp13199T199delACC---11B.1.177.170.000821
ORF1ab/nsp13199T199delACC---11B.1.177.830.001481
ORF1ab/nsp13199T199delACC---11C.170.055556