CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = T199T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13199T199TT5523TsynacCacT9147800.85339216831-16833
ORF1ab/nsp13199T199TT5523TsynacCacA9141330.14551416831-16833
ORF1ab/nsp13199T199TT5523TsynacCacG91410.0010940916831-16833

Details of the mutation T199T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13199T199TacCacT780914All0.000149
ORF1ab/nsp13199T199TacCacA133914All0.000025
ORF1ab/nsp13199T199TacCacG1914All0
ORF1ab/nsp13199T199TacCacT372372B.1.258.220.992
ORF1ab/nsp13199T199TacCacT117145B.1.1.70.000105
ORF1ab/nsp13199T199TacCacA28145B.1.1.70.000025
ORF1ab/nsp13199T199TacCacT4040B.1.20.000352
ORF1ab/nsp13199T199TacCacA3535B.1.1.3980.112903
ORF1ab/nsp13199T199TacCacT2134B.1.617.20.000079
ORF1ab/nsp13199T199TacCacA1334B.1.617.20.000049
ORF1ab/nsp13199T199TacCacT2930AY.250.000174
ORF1ab/nsp13199T199TacCacA130AY.250.000006
ORF1ab/nsp13199T199TacCacT2829AY.430.000124
ORF1ab/nsp13199T199TacCacA129AY.430.000004
ORF1ab/nsp13199T199TacCacT2424B.1.160.190.857143
ORF1ab/nsp13199T199TacCacA1719AY.30.000169
ORF1ab/nsp13199T199TacCacT219AY.30.00002
ORF1ab/nsp13199T199TacCacT914AY.40.000014
ORF1ab/nsp13199T199TacCacA514AY.40.000008
ORF1ab/nsp13199T199TacCacT713AY.440.000043
ORF1ab/nsp13199T199TacCacA613AY.440.000037
ORF1ab/nsp13199T199TacCacT913B.10.000082
ORF1ab/nsp13199T199TacCacA413B.10.000037
ORF1ab/nsp13199T199TacCacT1313B.1.1770.000171
ORF1ab/nsp13199T199TacCacT810B.1.10.000145
ORF1ab/nsp13199T199TacCacG110B.1.10.000018
ORF1ab/nsp13199T199TacCacA110B.1.10.000018
ORF1ab/nsp13199T199TacCacT99B.1.4270.000454
ORF1ab/nsp13199T199TacCacT88B.1.1.3330.008611
ORF1ab/nsp13199T199TacCacT88B.1.5250.000905
ORF1ab/nsp13199T199TacCacT67AY.390.000148
ORF1ab/nsp13199T199TacCacA17AY.390.000025
ORF1ab/nsp13199T199TacCacT77P.1.150.001626
ORF1ab/nsp13199T199TacCacT46AY.1030.000025
ORF1ab/nsp13199T199TacCacA26AY.1030.000012
ORF1ab/nsp13199T199TacCacT66AY.700.001251
ORF1ab/nsp13199T199TacCacT55AY.1100.000563
ORF1ab/nsp13199T199TacCacT23AY.230.000139
ORF1ab/nsp13199T199TacCacA13AY.230.00007
ORF1ab/nsp13199T199TacCacT33AY.290.000047
ORF1ab/nsp13199T199TacCacT33AY.75.10.000541
ORF1ab/nsp13199T199TacCacT33B.1.5960.000261
ORF1ab/nsp13199T199TacCacT23P.10.000032
ORF1ab/nsp13199T199TacCacA13P.10.000016
ORF1ab/nsp13199T199TacCacT22AY.1000.000092
ORF1ab/nsp13199T199TacCacT12AY.1020.000027
ORF1ab/nsp13199T199TacCacA12AY.1020.000027
ORF1ab/nsp13199T199TacCacT22AY.200.000078
ORF1ab/nsp13199T199TacCacA22AY.710.00095
ORF1ab/nsp13199T199TacCacT22B.1.1.3350.025974
ORF1ab/nsp13199T199TacCacT22B.1.1.5190.000079
ORF1ab/nsp13199T199TacCacA22B.1.6370.000146
ORF1ab/nsp13199T199TacCacT22B.1.930.001867
ORF1ab/nsp13199T199TacCacT22P.20.000373
ORF1ab/nsp13199T199TacCacT11A.20.000662
ORF1ab/nsp13199T199TacCacT11A.23.10.000704
ORF1ab/nsp13199T199TacCacA11AY.1170.000085
ORF1ab/nsp13199T199TacCacT11AY.1180.000063
ORF1ab/nsp13199T199TacCacA11AY.1190.000035
ORF1ab/nsp13199T199TacCacT11AY.120.000316
ORF1ab/nsp13199T199TacCacA11AY.370.000316
ORF1ab/nsp13199T199TacCacA11AY.4.20.000022
ORF1ab/nsp13199T199TacCacA11AY.4.50.000107
ORF1ab/nsp13199T199TacCacT11AY.46.60.000072
ORF1ab/nsp13199T199TacCacT11AY.480.000465
ORF1ab/nsp13199T199TacCacT11AY.70.000196
ORF1ab/nsp13199T199TacCacT11AY.750.000056
ORF1ab/nsp13199T199TacCacA11AY.840.000437
ORF1ab/nsp13199T199TacCacA11AY.9.10.000084
ORF1ab/nsp13199T199TacCacT11AY.9.20.000037
ORF1ab/nsp13199T199TacCacT11B.1.1.2140.000055
ORF1ab/nsp13199T199TacCacT11B.1.1.250.000569
ORF1ab/nsp13199T199TacCacA11B.1.1.5230.001563
ORF1ab/nsp13199T199TacCacT11B.1.1600.000031
ORF1ab/nsp13199T199TacCacA11B.1.177.70.000165
ORF1ab/nsp13199T199TacCacA11B.1.3490.000715
ORF1ab/nsp13199T199TacCacT11B.1.351.20.000303
ORF1ab/nsp13199T199TacCacA11B.1.36.310.001751
ORF1ab/nsp13199T199TacCacT11B.1.3690.000285
ORF1ab/nsp13199T199TacCacT11B.1.3960.000706
ORF1ab/nsp13199T199TacCacT11B.1.4080.00369
ORF1ab/nsp13199T199TacCacT11B.1.4090.000781
ORF1ab/nsp13199T199TacCacT11B.1.5640.000426
ORF1ab/nsp13199T199TacCacT11B.1.6360.006711
ORF1ab/nsp13199T199TacCacT11B.30.000831
ORF1ab/nsp13199T199TacCacT11C.370.000116
ORF1ab/nsp13199T199TacCacA11P.1.70.000319
ORF1ab/nsp13199T199TacCacT11Q.80.000165