CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = T199S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13199T199ST5523SnonsynAccTcc19110.57894716831-16833
ORF1ab/nsp13199T199ST5523SnonsynAcCTcT1970.36842116831-16833
ORF1ab/nsp13199T199ST5523SnonsynAcCTcA1910.052631616831-16833

Details of the mutation T199S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13199T199SAccTcc1119All0.000002
ORF1ab/nsp13199T199SAcCTcT719All0.000001
ORF1ab/nsp13199T199SAcCTcA119All0
ORF1ab/nsp13199T199SAccTcc34B.1.1.70.000003
ORF1ab/nsp13199T199SAcCTcA14B.1.1.70.000001
ORF1ab/nsp13199T199SAcCTcT24B.1.617.20.000008
ORF1ab/nsp13199T199SAccTcc24B.1.617.20.000008
ORF1ab/nsp13199T199SAccTcc220.111111
ORF1ab/nsp13199T199SAccTcc12AY.1130.000142
ORF1ab/nsp13199T199SAcCTcT12AY.1130.000142
ORF1ab/nsp13199T199SAcCTcT22AY.430.000009
ORF1ab/nsp13199T199SAccTcc12AY.9.20.000037
ORF1ab/nsp13199T199SAcCTcT12AY.9.20.000037
ORF1ab/nsp13199T199SAcCTcT11AY.670.000464
ORF1ab/nsp13199T199SAccTcc11AY.98.10.000048
ORF1ab/nsp13199T199SAccTcc11B.1.5960.000087