CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = S74S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1374S74SS5398SsyntcAtcG121850.70247916456-16458
ORF1ab/nsp1374S74SS5398SsyntcAtcC121320.26446316456-16458
ORF1ab/nsp1374S74SS5398SsyntcAtcT12140.033057816456-16458

Details of the mutation S74S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1374S74StcAtcG85121All0.000016
ORF1ab/nsp1374S74StcAtcC32121All0.000006
ORF1ab/nsp1374S74StcAtcT4121All0.000001
ORF1ab/nsp1374S74StcAtcG2528B.1.1.70.000022
ORF1ab/nsp1374S74StcAtcC228B.1.1.70.000002
ORF1ab/nsp1374S74StcAtcT128B.1.1.70.000001
ORF1ab/nsp1374S74StcAtcG1214AY.40.000019
ORF1ab/nsp1374S74StcAtcC214AY.40.000003
ORF1ab/nsp1374S74StcAtcC1111B.1.177.80.008277
ORF1ab/nsp1374S74StcAtcC99AY.90.000608
ORF1ab/nsp1374S74StcAtcG79B.1.617.20.000026
ORF1ab/nsp1374S74StcAtcC29B.1.617.20.000008
ORF1ab/nsp1374S74StcAtcG77B.1.1.3180.002112
ORF1ab/nsp1374S74StcAtcC35AY.440.000018
ORF1ab/nsp1374S74StcAtcG25AY.440.000012
ORF1ab/nsp1374S74StcAtcG44AY.430.000018
ORF1ab/nsp1374S74StcAtcG44AY.50.000083
ORF1ab/nsp1374S74StcAtcG44B.1.1.5190.000159
ORF1ab/nsp1374S74StcAtcG33B.1.20.000026
ORF1ab/nsp1374S74StcAtcT120.055556
ORF1ab/nsp1374S74StcAtcC120.055556
ORF1ab/nsp1374S74StcAtcG22AY.1020.000053
ORF1ab/nsp1374S74StcAtcG22AY.1030.000012
ORF1ab/nsp1374S74StcAtcG12B.10.000009
ORF1ab/nsp1374S74StcAtcC12B.10.000009
ORF1ab/nsp1374S74StcAtcG11AY.116.10.000311
ORF1ab/nsp1374S74StcAtcG11AY.1190.000035
ORF1ab/nsp1374S74StcAtcG11AY.160.00038
ORF1ab/nsp1374S74StcAtcG11AY.250.000006
ORF1ab/nsp1374S74StcAtcG11AY.260.000028
ORF1ab/nsp1374S74StcAtcG11AY.30.00001
ORF1ab/nsp1374S74StcAtcC11AY.370.000316
ORF1ab/nsp1374S74StcAtcG11AY.540.000095
ORF1ab/nsp1374S74StcAtcG11B.1.1.2140.000055
ORF1ab/nsp1374S74StcAtcG11B.1.1.2220.000204
ORF1ab/nsp1374S74StcAtcT11B.1.1770.000013
ORF1ab/nsp1374S74StcAtcG11B.1.3360.002439
ORF1ab/nsp1374S74StcAtcG11B.1.5250.000113
ORF1ab/nsp1374S74StcAtcT11P.10.000016
ORF1ab/nsp1374S74StcAtcG11P.1.160.000374