CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = S485del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13485S485del1S5809del1deltCAtT-310.33333317689-17691
ORF1ab/nsp13485S485del1S5809del1deltCat-a310.33333317689-17691
ORF1ab/nsp13485S485del1S5809del1delTca-ca310.33333317689-17691

Details of the mutation S485del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13485S485del1tCAtT-13All0
ORF1ab/nsp13485S485del1tCat-a13All0
ORF1ab/nsp13485S485del1Tca-ca13All0
ORF1ab/nsp13485S485del1tCat-a11AY.40.000002
ORF1ab/nsp13485S485del1tCAtT-11B.1.10.000018
ORF1ab/nsp13485S485del1Tca-ca11B.1.1.70.000001