CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 485 | S485L | S5809L | nonsyn | tCa | tTa | 1635 | 1635 | 1 | 17689-17691 |
Details of the mutation S485L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1635 | 1635 | All | 0.000313 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 160 | 160 | B.1.9.4 | 0.981595 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 159 | 159 | B.1.9.5 | 0.903409 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 155 | 155 | B.1 | 0.00142 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 152 | 152 | B.1.9 | 0.938272 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 140 | 140 | AY.4 | 0.000218 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 126 | 126 | B.1.147 | 0.095238 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 65 | 65 | AY.114 | 0.015022 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 52 | 52 | B.1.1.7 | 0.000047 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 31 | 31 | B.1.9.1 | 1 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 29 | 29 | B.1.36.17 | 0.014328 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 26 | 26 | B.1.9.3 | 1 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 18 | 18 | AY.4.2 | 0.00039 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 15 | 15 | B.1.36.18 | 0.006303 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 10 | 10 | B.1.9.2 | 1 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 8 | 8 | B | 0.001022 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 8 | 8 | B.1.1.269 | 0.010825 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 6 | 6 | C.1 | 0.014354 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | B.1.422 | 0.004062 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 4 | 4 | C.40 | 0.111111 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.371 | 0.003367 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.382 | 0.026786 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.1.208 | 0.02439 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.284 | 0.026316 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | M.3 | 0.153846 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 485 | S485L | tCa | tTa | 1 | 1 | C.37 | 0.000116 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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