CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = S301L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13301S301LS5625LnonsyntCTtTA21100.4761917137-17139
ORF1ab/nsp13301S301LS5625LnonsynTCTCTA2150.23809517137-17139
ORF1ab/nsp13301S301LS5625LnonsynTCTCTC2140.19047617137-17139
ORF1ab/nsp13301S301LS5625LnonsynTCTCTG2110.04761917137-17139
ORF1ab/nsp13301S301LS5625LnonsynTCtCTt2110.04761917137-17139

Details of the mutation S301L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13301S301LtCTtTA1021All0.000002
ORF1ab/nsp13301S301LTCTCTA521All0.000001
ORF1ab/nsp13301S301LTCTCTC421All0.000001
ORF1ab/nsp13301S301LTCTCTG121All0
ORF1ab/nsp13301S301LTCtCTt121All0
ORF1ab/nsp13301S301LtCTtTA1021B.1.1.70.000009
ORF1ab/nsp13301S301LTCTCTA521B.1.1.70.000004
ORF1ab/nsp13301S301LTCTCTC421B.1.1.70.000004
ORF1ab/nsp13301S301LTCTCTG121B.1.1.70.000001
ORF1ab/nsp13301S301LTCtCTt121B.1.1.70.000001