CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = S301A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13301S301AS5625AnonsynTctGct29150.51724117137-17139
ORF1ab/nsp13301S301AS5625AnonsynTcTGcA2980.27586217137-17139
ORF1ab/nsp13301S301AS5625AnonsynTcTGcC2960.20689717137-17139

Details of the mutation S301A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13301S301ATctGct1529All0.000003
ORF1ab/nsp13301S301ATcTGcA829All0.000002
ORF1ab/nsp13301S301ATcTGcC629All0.000001
ORF1ab/nsp13301S301ATctGct921B.1.1.70.000008
ORF1ab/nsp13301S301ATcTGcA721B.1.1.70.000006
ORF1ab/nsp13301S301ATcTGcC521B.1.1.70.000004
ORF1ab/nsp13301S301ATctGct12AY.250.000006
ORF1ab/nsp13301S301ATcTGcA12AY.250.000006
ORF1ab/nsp13301S301ATctGct11AY.4.20.000022
ORF1ab/nsp13301S301ATcTGcC11AY.440.000006
ORF1ab/nsp13301S301ATctGct11AY.90.000068
ORF1ab/nsp13301S301ATctGct11B.1.1.2140.000055
ORF1ab/nsp13301S301ATctGct11B.1.6210.000089
ORF1ab/nsp13301S301ATctGct11B.30.000831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.