CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = S229S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13229S229SS5553SsyntcAtcG200619890.99152516921-16923
ORF1ab/nsp13229S229SS5553SsyntcAtcT2006130.0064805616921-16923
ORF1ab/nsp13229S229SS5553SsyntcAtcC200640.0019940216921-16923

Details of the mutation S229S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13229S229StcAtcG19892006All0.00038
ORF1ab/nsp13229S229StcAtcT132006All0.000002
ORF1ab/nsp13229S229StcAtcC42006All0.000001
ORF1ab/nsp13229S229StcAtcG19051905B.1.1.1760.836995
ORF1ab/nsp13229S229StcAtcG1717B.1.2790.008731
ORF1ab/nsp13229S229StcAtcG1515B.1.2580.000998
ORF1ab/nsp13229S229StcAtcT910AY.60.00037
ORF1ab/nsp13229S229StcAtcG110AY.60.000041
ORF1ab/nsp13229S229StcAtcG68AY.40.000009
ORF1ab/nsp13229S229StcAtcC28AY.40.000003
ORF1ab/nsp13229S229StcAtcG77AS.10.066667
ORF1ab/nsp13229S229StcAtcG77B.1.10.000127
ORF1ab/nsp13229S229StcAtcG77B.1.1.70.000006
ORF1ab/nsp13229S229StcAtcG56B.1.617.20.000019
ORF1ab/nsp13229S229StcAtcT16B.1.617.20.000004
ORF1ab/nsp13229S229StcAtcG44B.10.000037
ORF1ab/nsp13229S229StcAtcG22AE.10.022727
ORF1ab/nsp13229S229StcAtcG22AY.30.00002
ORF1ab/nsp13229S229StcAtcT12AY.430.000004
ORF1ab/nsp13229S229StcAtcG12AY.430.000004
ORF1ab/nsp13229S229StcAtcG12AY.750.000056
ORF1ab/nsp13229S229StcAtcC12AY.750.000056
ORF1ab/nsp13229S229StcAtcG22P.1.10.000635
ORF1ab/nsp13229S229StcAtcG110.055556
ORF1ab/nsp13229S229StcAtcT11AY.230.00007
ORF1ab/nsp13229S229StcAtcG11AY.250.000006
ORF1ab/nsp13229S229StcAtcG11AY.440.000006
ORF1ab/nsp13229S229StcAtcC11AY.50.000021
ORF1ab/nsp13229S229StcAtcG11AY.99.20.000092
ORF1ab/nsp13229S229StcAtcG11B.1.1.100.001115
ORF1ab/nsp13229S229StcAtcG11B.1.20.000009
ORF1ab/nsp13229S229StcAtcG11B.1.2430.00007
ORF1ab/nsp13229S229StcAtcT11P.10.000016