CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 166 | S166L | S5490L | nonsyn | tCa | tTa | 6316 | 6313 | 0.999525 | 16732-16734 |
ORF1ab/nsp13 | 166 | S166L | S5490L | nonsyn | TCA | CTT | 6316 | 2 | 0.000316656 | 16732-16734 |
ORF1ab/nsp13 | 166 | S166L | S5490L | nonsyn | TCA | CTG | 6316 | 1 | 0.000158328 | 16732-16734 |
Details of the mutation S166L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6313 | 6316 | All | 0.001207 |
ORF1ab/nsp13 | 166 | S166L | TCA | CTT | 2 | 6316 | All | 0 |
ORF1ab/nsp13 | 166 | S166L | TCA | CTG | 1 | 6316 | All | 0 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2497 | 2497 | B.1.1.7 | 0.002235 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 557 | 557 | AY.3 | 0.00554 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 444 | 444 | AY.4 | 0.000691 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 248 | 248 | B.1.617.2 | 0.000934 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 201 | 201 | AY.44 | 0.001223 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 196 | 196 | B.1.2 | 0.001726 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 174 | 174 | AY.25 | 0.001047 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 166 | 166 | B.1.160 | 0.005177 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 97 | 100 | B.1 | 0.000888 |
ORF1ab/nsp13 | 166 | S166L | TCA | CTT | 2 | 100 | B.1 | 0.000018 |
ORF1ab/nsp13 | 166 | S166L | TCA | CTG | 1 | 100 | B.1 | 0.000009 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 88 | 88 | AY.103 | 0.000546 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 78 | 78 | AY.6 | 0.003208 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 76 | 76 | P.1 | 0.001197 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 68 | 68 | B.1.595.1 | 0.397661 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 56 | 56 | AY.121 | 0.007578 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 55 | 55 | AY.39 | 0.001359 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 53 | 53 | AY.113 | 0.007547 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 48 | 48 | AY.43 | 0.000213 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 48 | 48 | B.1.429 | 0.001129 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 48 | 48 | Q.8 | 0.007916 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 44 | 44 | B.1.1 | 0.000798 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 29 | 29 | AY.31 | 0.537037 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 29 | 29 | B.1.1.500 | 0.58 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 29 | 29 | B.1.177.82 | 0.013842 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 28 | 28 | B.1.177 | 0.000369 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 26 | 26 | B.1.258 | 0.00173 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 25 | 25 | AY.102 | 0.000663 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 25 | 25 | AY.118 | 0.001566 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 25 | 25 | B.1.243 | 0.00174 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 24 | 24 | B.1.526 | 0.000564 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 21 | 21 | B.1.351 | 0.000624 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 19 | 19 | B.1.351.3 | 0.016652 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 18 | 18 | B.1.521 | 0.089552 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 17 | 17 | AY.120 | 0.000632 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 16 | 16 | B.1.1.222 | 0.003264 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 15 | 15 | B.1.1.330 | 0.9375 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 12 | 12 | AY.74 | 0.001388 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 11 | 11 | B.1.1.37 | 0.002122 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 11 | 11 | B.1.177.56 | 0.007343 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 9 | 9 | B.1.1.189 | 0.013616 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 9 | 9 | B.1.588 | 0.008189 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 9 | 9 | B.1.620 | 0.008515 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 9 | 9 | Q.7 | 0.01 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 7 | 7 | AE.8 | 0.003423 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 7 | 7 | AY.13 | 0.001127 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 7 | 7 | B.1.160.14 | 0.014831 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | A | 0.002322 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | B.1.1.304 | 0.016854 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | B.1.177.57 | 0.001686 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 6 | 6 | C.35 | 0.004644 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | AY.51 | 0.004545 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | AY.55 | 0.004587 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 5 | 5 | P.1.1 | 0.001588 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | A.28 | 0.010582 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.36.19 | 0.037037 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.474 | 0.007605 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.146 | 0.012712 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.177.40 | 0.015464 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.177.80 | 0.005736 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.113 | 0.013986 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.13 | 0.004751 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.177.72 | 0.00678 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.258.7 | 0.003824 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.556 | 0.015038 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.1.77 | 0.041667 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | C.19 | 0.027027 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 166 | S166L | tCa | tTa | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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