CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 442 | R442R | R5766R | syn | cgG | cgT | 5438 | 4785 | 0.879919 | 17560-17562 |
ORF1ab/nsp13 | 442 | R442R | R5766R | syn | cgG | cgA | 5438 | 486 | 0.0893711 | 17560-17562 |
ORF1ab/nsp13 | 442 | R442R | R5766R | syn | Cgg | Agg | 5438 | 111 | 0.0204119 | 17560-17562 |
ORF1ab/nsp13 | 442 | R442R | R5766R | syn | cgG | cgC | 5438 | 56 | 0.0102979 | 17560-17562 |
Details of the mutation R442R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4785 | 5438 | All | 0.000915 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 486 | 5438 | All | 0.000093 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 111 | 5438 | All | 0.000021 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 56 | 5438 | All | 0.000011 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 565 | 638 | B.1.1.7 | 0.000506 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 57 | 638 | B.1.1.7 | 0.000051 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 16 | 638 | B.1.1.7 | 0.000014 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 498 | 500 | P.1 | 0.007845 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 2 | 500 | P.1 | 0.000032 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 456 | 456 | B.1.1.214 | 0.025288 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 287 | 291 | AY.44 | 0.001747 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 3 | 291 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 291 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 247 | 264 | AY.43 | 0.001094 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 13 | 264 | AY.43 | 0.000058 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 2 | 264 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 2 | 264 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 214 | 241 | AY.4 | 0.000333 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 16 | 241 | AY.4 | 0.000025 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 10 | 241 | AY.4 | 0.000016 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 241 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 213 | 223 | B.1.617.2 | 0.000802 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 5 | 223 | B.1.617.2 | 0.000019 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 4 | 223 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 1 | 223 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 191 | 217 | AY.39 | 0.00472 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 26 | 217 | AY.39 | 0.000642 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 213 | 215 | B.1.243 | 0.014822 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 215 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 174 | 174 | AT.1 | 0.892308 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 81 | 154 | B.1.177 | 0.001067 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 72 | 154 | B.1.177 | 0.000948 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 154 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 145 | 149 | B.1.2 | 0.001277 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 3 | 149 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 149 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 89 | 101 | B.1 | 0.000815 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 6 | 101 | B.1 | 0.000055 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 3 | 101 | B.1 | 0.000027 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 3 | 101 | B.1 | 0.000027 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 94 | 95 | AY.103 | 0.000584 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 95 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 79 | 79 | AY.4.2.1 | 0.01177 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 59 | 69 | AY.25 | 0.000355 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 5 | 69 | AY.25 | 0.00003 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 5 | 69 | AY.25 | 0.00003 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 66 | 66 | AY.20 | 0.002565 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 66 | 66 | B.1.1.222 | 0.013464 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 62 | 64 | B.1.1 | 0.001125 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 64 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 64 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 57 | 57 | B.1.236 | 0.117043 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 53 | 53 | C.35 | 0.041022 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 46 | 47 | B.1.1.519 | 0.001827 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 47 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 45 | 46 | AY.46.6 | 0.003249 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 46 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 41 | 45 | B.1.351 | 0.001219 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 4 | 45 | B.1.351 | 0.000119 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 43 | 43 | C.1.2 | 0.182979 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 26 | 42 | AY.102 | 0.000689 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 11 | 42 | AY.102 | 0.000292 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 5 | 42 | AY.102 | 0.000133 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 38 | 39 | B.1.526 | 0.000893 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 39 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 38 | 38 | AY.9.2 | 0.001396 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 31 | 31 | AY.46.4 | 0.0051 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 28 | 30 | AY.26 | 0.000793 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 30 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 30 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 29 | 29 | B.1.438.1 | 0.003111 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 24 | 27 | AY.3 | 0.000239 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 3 | 27 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 23 | 23 | AY.33 | 0.001536 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 22 | 22 | B.1.400 | 0.009438 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 14 | 21 | AY.36 | 0.002075 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 7 | 21 | AY.36 | 0.001037 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 21 | 21 | AY.9 | 0.001419 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 20 | 21 | B.1.36 | 0.002918 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 21 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 13 | 16 | AY.98.1 | 0.00063 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 2 | 16 | AY.98.1 | 0.000097 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 16 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 16 | 16 | B.1.1.398 | 0.051613 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 11 | 14 | P.1.14 | 0.000526 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 3 | 14 | P.1.14 | 0.000143 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 12 | 12 | B.1.1.277 | 0.009105 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 12 | 12 | B.1.177.21 | 0.000918 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 9 | 12 | B.1.258 | 0.000599 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 3 | 12 | B.1.258 | 0.0002 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 10 | 11 | AY.98 | 0.00079 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 11 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 9 | 10 | AY.29 | 0.000142 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 10 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 8 | 10 | AY.6 | 0.000329 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 2 | 10 | AY.6 | 0.000082 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 10 | 10 | B.1.1.389 | 0.060606 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 9 | 9 | AY.16.1 | 0.004229 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 8 | 9 | AY.5 | 0.000165 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 9 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 8 | 9 | P.1.15 | 0.001859 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 9 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 7 | 8 | AY.4.2 | 0.000152 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 8 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 6 | 8 | AY.45 | 0.00073 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 2 | 8 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 7 | 8 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 8 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 7 | 7 | AY.74 | 0.00081 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 5 | 7 | B.1.582 | 0.002453 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 7 | B.1.582 | 0.000981 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 5 | 7 | B.1.617.1 | 0.000645 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 7 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 6 | AY.119 | 0.000177 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 6 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 6 | 6 | B.1.1.56 | 0.107143 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 6 | 6 | B.1.505 | 0.026316 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 6 | B.1.621 | 0.000266 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 2 | 6 | B.1.621 | 0.000177 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 6 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 5 | AV.1 | 0.020202 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 5 | AV.1 | 0.005051 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | AY.1 | 0.001979 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 5 | AY.117 | 0.000338 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 1 | 5 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 5 | AY.13 | 0.000644 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 5 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | AY.67 | 0.002321 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | B.1.1.432 | 0.006329 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 5 | 5 | C.18 | 0.012953 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.22 | 0.008368 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | B.1.124 | 0.03125 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | B.1.199 | 0.016529 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 3 | 4 | B.1.311 | 0.000824 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 4 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | C.4 | 0.04 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 3 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 3 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.1.261 | 0.025862 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 3 | B.1.1.28 | 0.000622 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 1 | 3 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 2 | 3 | B.1.1.397 | 0.004505 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 3 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.192 | 0.027778 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.351.5 | 0.001799 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 2 | 3 | B.1.409 | 0.001563 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 3 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | C.36.3.1 | 0.008152 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 2 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 2 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 2 | B | 0.000128 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 2 | B | 0.000128 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 2 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 2 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.276 | 0.033898 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 2 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 2 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | B.38 | 0.047619 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 2 | 2 | C.13 | 0.051282 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | P.1.8 | 0.009569 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | P.1.9 | 0.009615 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgA | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 442 | R442R | Cgg | Agg | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 442 | R442R | cgG | cgT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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