CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = R409R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13409R409RR5733RsyncgCcgT136213120.96328917461-17463
ORF1ab/nsp13409R409RR5733RsyncgCcgA1362360.026431717461-17463
ORF1ab/nsp13409R409RR5733RsyncgCcgG1362120.0088105717461-17463
ORF1ab/nsp13409R409RR5733RsynCgCAgA136220.0014684317461-17463

Details of the mutation R409R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13409R409RcgCcgT13121362All0.000251
ORF1ab/nsp13409R409RcgCcgA361362All0.000007
ORF1ab/nsp13409R409RcgCcgG121362All0.000002
ORF1ab/nsp13409R409RCgCAgA21362All0
ORF1ab/nsp13409R409RcgCcgT556561B.1.1.70.000498
ORF1ab/nsp13409R409RcgCcgA5561B.1.1.70.000004
ORF1ab/nsp13409R409RcgCcgT114114W.10.991304
ORF1ab/nsp13409R409RcgCcgT109110AY.40.00017
ORF1ab/nsp13409R409RcgCcgA1110AY.40.000002
ORF1ab/nsp13409R409RcgCcgT8990B.1.617.20.000335
ORF1ab/nsp13409R409RcgCcgA190B.1.617.20.000004
ORF1ab/nsp13409R409RcgCcgT6163B.1.20.000537
ORF1ab/nsp13409R409RcgCcgG163B.1.20.000009
ORF1ab/nsp13409R409RcgCcgA163B.1.20.000009
ORF1ab/nsp13409R409RcgCcgT4343AY.430.000191
ORF1ab/nsp13409R409RcgCcgT4141AY.1180.002569
ORF1ab/nsp13409R409RcgCcgT3333B.1.4270.001666
ORF1ab/nsp13409R409RcgCcgA1932AY.250.000114
ORF1ab/nsp13409R409RcgCcgT1332AY.250.000078
ORF1ab/nsp13409R409RcgCcgT2126B.10.000192
ORF1ab/nsp13409R409RCgCAgA226B.10.000018
ORF1ab/nsp13409R409RcgCcgA226B.10.000018
ORF1ab/nsp13409R409RcgCcgG126B.10.000009
ORF1ab/nsp13409R409RcgCcgT2020B.1.6210.00177
ORF1ab/nsp13409R409RcgCcgT1414AY.300.00554
ORF1ab/nsp13409R409RcgCcgT1313AY.390.000321
ORF1ab/nsp13409R409RcgCcgT1112AY.1030.000068
ORF1ab/nsp13409R409RcgCcgA112AY.1030.000006
ORF1ab/nsp13409R409RcgCcgT1010AY.1020.000265
ORF1ab/nsp13409R409RcgCcgT1010B.1.10.000181
ORF1ab/nsp13409R409RcgCcgG610P.10.000095
ORF1ab/nsp13409R409RcgCcgT410P.10.000063
ORF1ab/nsp13409R409RcgCcgT88AY.440.000049
ORF1ab/nsp13409R409RcgCcgT88B.1.5260.000188
ORF1ab/nsp13409R409RcgCcgT77AY.200.000272
ORF1ab/nsp13409R409RcgCcgT77B.1.1770.000092
ORF1ab/nsp13409R409RcgCcgT56A.2.50.002495
ORF1ab/nsp13409R409RcgCcgA16A.2.50.000499
ORF1ab/nsp13409R409RcgCcgT66AY.1160.001721
ORF1ab/nsp13409R409RcgCcgT56AY.30.00005
ORF1ab/nsp13409R409RcgCcgA16AY.30.00001
ORF1ab/nsp13409R409RcgCcgT66B.1.3510.000178
ORF1ab/nsp13409R409RcgCcgT66B.1.36.290.003104
ORF1ab/nsp13409R409RcgCcgT44B.1.177.160.002658
ORF1ab/nsp13409R409RcgCcgG44B.1.2360.008214
ORF1ab/nsp13409R409RcgCcgT44B.1.2580.000266
ORF1ab/nsp13409R409RcgCcgT44B.1.4330.01278
ORF1ab/nsp13409R409RcgCcgT33AY.400.002893
ORF1ab/nsp13409R409RcgCcgT33AY.50.000062
ORF1ab/nsp13409R409RcgCcgT33AY.540.000286
ORF1ab/nsp13409R409RcgCcgT33AY.9.10.000251
ORF1ab/nsp13409R409RcgCcgT33B.1.1600.000094
ORF1ab/nsp13409R409RcgCcgT33B.1.177.620.003576
ORF1ab/nsp13409R409RcgCcgT33P.1.150.000697
ORF1ab/nsp13409R409RcgCcgT33P.1.70.000958
ORF1ab/nsp13409R409RcgCcgT22AY.240.000862
ORF1ab/nsp13409R409RcgCcgT22AY.4.20.000043
ORF1ab/nsp13409R409RcgCcgT22AY.460.000208
ORF1ab/nsp13409R409RcgCcgT22AY.980.000158
ORF1ab/nsp13409R409RcgCcgT22B.1.1.280.000622
ORF1ab/nsp13409R409RcgCcgT22B.1.1.5190.000079
ORF1ab/nsp13409R409RcgCcgT12B.1.177.600.000218
ORF1ab/nsp13409R409RcgCcgA12B.1.177.600.000218
ORF1ab/nsp13409R409RcgCcgT22B.1.2210.000142
ORF1ab/nsp13409R409RcgCcgT22B.1.6060.012048
ORF1ab/nsp13409R409RcgCcgT22Q.10.000253
ORF1ab/nsp13409R409RcgCcgT11AY.1000.000046
ORF1ab/nsp13409R409RcgCcgT11AY.1190.000035
ORF1ab/nsp13409R409RcgCcgT11AY.1200.000037
ORF1ab/nsp13409R409RcgCcgT11AY.1210.000135
ORF1ab/nsp13409R409RcgCcgT11AY.230.00007
ORF1ab/nsp13409R409RcgCcgT11AY.260.000028
ORF1ab/nsp13409R409RcgCcgA11AY.330.000067
ORF1ab/nsp13409R409RcgCcgA11AY.360.000148
ORF1ab/nsp13409R409RcgCcgT11AY.4.50.000107
ORF1ab/nsp13409R409RcgCcgT11AY.490.003195
ORF1ab/nsp13409R409RcgCcgT11AY.530.000288
ORF1ab/nsp13409R409RcgCcgT11AY.610.000105
ORF1ab/nsp13409R409RcgCcgT11AY.620.000436
ORF1ab/nsp13409R409RcgCcgA11AY.690.000187
ORF1ab/nsp13409R409RcgCcgT11AY.9.20.000037
ORF1ab/nsp13409R409RcgCcgT11AY.900.000684
ORF1ab/nsp13409R409RcgCcgT11AY.920.000287
ORF1ab/nsp13409R409RcgCcgT11AY.99.20.000092
ORF1ab/nsp13409R409RcgCcgT11B.1.1.10.000327
ORF1ab/nsp13409R409RcgCcgT11B.1.1.1700.001247
ORF1ab/nsp13409R409RcgCcgT11B.1.1.2310.003096
ORF1ab/nsp13409R409RcgCcgT11B.1.160.160.000929
ORF1ab/nsp13409R409RcgCcgT11B.1.160.200.008929
ORF1ab/nsp13409R409RcgCcgT11B.1.177.570.000281
ORF1ab/nsp13409R409RcgCcgT11B.1.177.830.001481
ORF1ab/nsp13409R409RcgCcgT11B.1.177.870.000728
ORF1ab/nsp13409R409RcgCcgT11B.1.1950.005025
ORF1ab/nsp13409R409RcgCcgT11B.1.258.170.000104
ORF1ab/nsp13409R409RcgCcgT11B.1.3240.001605
ORF1ab/nsp13409R409RcgCcgT11B.1.36.180.00042
ORF1ab/nsp13409R409RcgCcgT11B.1.3670.000792
ORF1ab/nsp13409R409RcgCcgT11B.1.4970.000315
ORF1ab/nsp13409R409RcgCcgT11B.1.5970.00463
ORF1ab/nsp13409R409RcgCcgT11B.1.6230.000536
ORF1ab/nsp13409R409RcgCcgT11B.1.6370.000073
ORF1ab/nsp13409R409RcgCcgT11C.160.00106
ORF1ab/nsp13409R409RcgCcgT11C.370.000116
ORF1ab/nsp13409R409RcgCcgT11D.20.000075
ORF1ab/nsp13409R409RcgCcgT11P.30.001595
ORF1ab/nsp13409R409RcgCcgT11Q.30.000145