CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 392 | R392C | R5716C | nonsyn | Cgt | Tgt | 9105 | 9105 | 1 | 17410-17412 |
Details of the mutation R392C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 9105 | 9105 | All | 0.001741 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2385 | 2385 | B.1.1.7 | 0.002135 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 576 | 576 | AY.4 | 0.000896 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 566 | 566 | B.1.429 | 0.013317 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 412 | 412 | B.1.617.2 | 0.001551 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 374 | 374 | AY.3 | 0.00372 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 279 | 279 | B.1.2 | 0.002457 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 239 | 239 | AY.43 | 0.001059 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 203 | 203 | AY.120 | 0.007547 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 195 | 195 | B.11 | 1 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 186 | 186 | B.1 | 0.001704 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 185 | 185 | AY.44 | 0.001126 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 167 | 167 | AY.29 | 0.002634 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 161 | 161 | AY.56 | 0.258427 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 145 | 145 | B.1.1.519 | 0.005758 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 129 | 129 | AY.26 | 0.003652 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 127 | 127 | AY.102 | 0.003367 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 121 | 121 | AY.42 | 0.004868 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 114 | 114 | B.1.177 | 0.001501 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 107 | 107 | P.1 | 0.001686 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 96 | 96 | B.1.36 | 0.014006 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 93 | 93 | AY.36 | 0.013784 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 86 | 86 | B.1.1 | 0.00156 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 82 | 82 | AY.103 | 0.000509 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 74 | 74 | B.1.621 | 0.00655 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 70 | 70 | B.1.427 | 0.003535 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 68 | 68 | AY.25 | 0.000409 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 66 | 66 | AY.46 | 0.006869 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 54 | 54 | AY.61 | 0.005658 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 49 | 49 | AY.47 | 0.001524 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 46 | 46 | B.1.160.31 | 0.370968 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 46 | 46 | B.1.596 | 0.004008 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 45 | 45 | AY.39 | 0.001112 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 43 | 43 | AY.39.1 | 0.001703 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 43 | 43 | AY.74 | 0.004973 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 38 | 38 | B.1.1.45 | 0.535211 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 36 | 36 | B.1.243 | 0.002505 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 36 | 36 | B.1.609 | 0.017258 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 35 | 35 | B.1.526 | 0.000823 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 31 | 31 | AY.46.4 | 0.0051 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 31 | 31 | AY.54 | 0.002956 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 29 | 29 | AY.5 | 0.000599 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 28 | 28 | B.1.1.1 | 0.009147 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 27 | 27 | B.1.160 | 0.000842 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 26 | 26 | AY.68 | 0.007117 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 26 | 26 | B.1.1.413 | 0.17931 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 24 | 24 | B.1.1.322 | 0.210526 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 22 | 22 | B | 0.002812 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 21 | 21 | AY.3.1 | 0.00179 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 20 | 20 | B.1.1.216 | 0.017809 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 20 | 20 | B.1.621.1 | 0.010116 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 20 | 20 | P.1.17 | 0.003235 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 19 | 19 | AY.23 | 0.001325 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 18 | 18 | B.1.1.205 | 0.066914 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 18 | 18 | B.1.574 | 0.03871 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 18 | 18 | C.37 | 0.002089 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 17 | 17 | AY.9.2 | 0.000624 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 17 | 17 | B.1.206 | 0.013866 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 16 | 16 | A.2 | 0.010589 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 16 | 16 | AD.2 | 0.003503 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 16 | 16 | AY.106 | 0.005358 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 16 | 16 | B.1.1.39 | 0.008155 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 16 | 16 | B.1.637 | 0.001169 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 15 | 15 | B.1.177.4 | 0.003166 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 15 | 15 | B.1.258.7 | 0.028681 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 14 | 14 | AY.53 | 0.004025 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 13 | 13 | AY.46.6 | 0.000939 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 13 | 13 | B.1.234 | 0.001715 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 11 | 11 | AY.67 | 0.005107 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 11 | 11 | AY.7 | 0.002156 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 11 | 11 | B.1.1.70 | 0.003752 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 11 | 11 | D.2 | 0.000825 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 10 | 10 | B.1.1.28 | 0.003112 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 10 | 10 | B.1.177.8 | 0.007524 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 9 | 9 | AY.32 | 0.004792 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 9 | 9 | AY.35 | 0.002097 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 9 | 9 | B.1.232 | 0.004836 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 8 | 8 | A | 0.003096 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 8 | 8 | B.1.1.420 | 0.008048 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 7 | 7 | AY.29.1 | 0.001544 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 7 | 7 | B.55 | 0.020649 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | AY.46.1 | 0.00616 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | B.1.110.1 | 0.6 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | C.1 | 0.014354 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | AY.120.2 | 0.006427 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.1.227 | 0.021739 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.1.372 | 0.003444 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.177.75 | 0.005203 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.289 | 0.013298 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 5 | 5 | B.1.599 | 0.018248 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.48 | 0.00186 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | B.1.177.9 | 0.005326 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | B.1.593 | 0.043478 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.382 | 0.026786 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | C.6 | 0.111111 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | A.2.2 | 0.003378 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.122 | 0.090909 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.208 | 0.02439 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.177.41 | 0.005 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.213 | 0.029851 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.438.2 | 0.038462 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.439 | 0.011834 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.1.638 | 0.105263 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | C.13 | 0.051282 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | A.24 | 0.071429 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.257 | 0.009709 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | W.4 | 0.001351 |
ORF1ab/nsp13 | 392 | R392C | Cgt | Tgt | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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