CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = R303R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13303R303RR5627RsyncgCcgT5794510.77892917143-17145
ORF1ab/nsp13303R303RR5627RsyncgCcgA5791240.21416217143-17145
ORF1ab/nsp13303R303RR5627RsyncgCcgG57930.0051813517143-17145
ORF1ab/nsp13303R303RR5627RsynCgCAgG57910.0017271217143-17145

Details of the mutation R303R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13303R303RcgCcgT451579All0.000086
ORF1ab/nsp13303R303RcgCcgA124579All0.000024
ORF1ab/nsp13303R303RcgCcgG3579All0.000001
ORF1ab/nsp13303R303RCgCAgG1579All0
ORF1ab/nsp13303R303RcgCcgA111138P.10.001749
ORF1ab/nsp13303R303RcgCcgT27138P.10.000425
ORF1ab/nsp13303R303RcgCcgT6969AY.1030.000428
ORF1ab/nsp13303R303RcgCcgT6969AY.40.000107
ORF1ab/nsp13303R303RcgCcgT6363B.1.4441
ORF1ab/nsp13303R303RcgCcgT5558B.1.1.70.000049
ORF1ab/nsp13303R303RcgCcgA158B.1.1.70.000001
ORF1ab/nsp13303R303RCgCAgG158B.1.1.70.000001
ORF1ab/nsp13303R303RcgCcgG158B.1.1.70.000001
ORF1ab/nsp13303R303RcgCcgT4343A.23.10.030282
ORF1ab/nsp13303R303RcgCcgT1818B.1.214.20.010791
ORF1ab/nsp13303R303RcgCcgT1112B.1.617.20.000041
ORF1ab/nsp13303R303RcgCcgA112B.1.617.20.000004
ORF1ab/nsp13303R303RcgCcgT99B.1.1770.000119
ORF1ab/nsp13303R303RcgCcgA66AY.1210.000812
ORF1ab/nsp13303R303RcgCcgT66AY.5.30.002024
ORF1ab/nsp13303R303RcgCcgT66B.10.000055
ORF1ab/nsp13303R303RcgCcgT55B.1.1.5190.000199
ORF1ab/nsp13303R303RcgCcgT44AY.420.000161
ORF1ab/nsp13303R303RcgCcgT44AY.440.000024
ORF1ab/nsp13303R303RcgCcgT44B.1.1.3060.001754
ORF1ab/nsp13303R303RcgCcgT44B.1.1190.042105
ORF1ab/nsp13303R303RcgCcgT33AY.1020.00008
ORF1ab/nsp13303R303RcgCcgT33B.1.160.280.008772
ORF1ab/nsp13303R303RcgCcgT33B.1.177.580.003995
ORF1ab/nsp13303R303RcgCcgT22AY.130.000322
ORF1ab/nsp13303R303RcgCcgT22AY.250.000012
ORF1ab/nsp13303R303RcgCcgT12AY.30.00001
ORF1ab/nsp13303R303RcgCcgG12AY.30.00001
ORF1ab/nsp13303R303RcgCcgT22AY.46.20.001271
ORF1ab/nsp13303R303RcgCcgT22AY.750.000112
ORF1ab/nsp13303R303RcgCcgT22B.1.10.000036
ORF1ab/nsp13303R303RcgCcgT22B.1.1.270.011299
ORF1ab/nsp13303R303RcgCcgT22B.1.1.3680.006173
ORF1ab/nsp13303R303RcgCcgA22B.1.1.5260.007092
ORF1ab/nsp13303R303RcgCcgT22B.1.110.30.001437
ORF1ab/nsp13303R303RcgCcgT22B.1.177.210.000153
ORF1ab/nsp13303R303RcgCcgT22B.1.177.770.001452
ORF1ab/nsp13303R303RcgCcgT22B.1.20.000018
ORF1ab/nsp13303R303RcgCcgA22B.1.2400.000431
ORF1ab/nsp13303R303RcgCcgT22B.1.360.000292
ORF1ab/nsp13303R303RcgCcgT22B.1.5260.000047
ORF1ab/nsp13303R303RcgCcgT22D.20.00015
ORF1ab/nsp13303R303RcgCcgT11AY.200.000039
ORF1ab/nsp13303R303RcgCcgT11AY.230.00007
ORF1ab/nsp13303R303RcgCcgA11AY.430.000004
ORF1ab/nsp13303R303RcgCcgT11AY.540.000095
ORF1ab/nsp13303R303RcgCcgT11AY.610.000105
ORF1ab/nsp13303R303RcgCcgT11AY.99.20.000092
ORF1ab/nsp13303R303RcgCcgT11B0.000128
ORF1ab/nsp13303R303RcgCcgT11B.1.1.1890.001513
ORF1ab/nsp13303R303RcgCcgT11B.1.1.2370.005405
ORF1ab/nsp13303R303RcgCcgT11B.1.177.570.000281
ORF1ab/nsp13303R303RcgCcgT11B.1.258.170.000104
ORF1ab/nsp13303R303RcgCcgG11B.1.36.80.001
ORF1ab/nsp13303R303RcgCcgT11B.1.4270.00005
ORF1ab/nsp13303R303RcgCcgT11B.1.4700.001404
ORF1ab/nsp13303R303RcgCcgT11B.1.5770.000687
ORF1ab/nsp13303R303RcgCcgT11C.1.20.004255
ORF1ab/nsp13303R303RcgCcgT11C.370.000116
ORF1ab/nsp13303R303RcgCcgT11P.1.120.000484