CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = R303L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13303R303LR5627LnonsyncGccTc1221070.87704917143-17145
ORF1ab/nsp13303R303LR5627LnonsyncGCcTT12250.040983617143-17145
ORF1ab/nsp13303R303LR5627LnonsynCGCTTA12240.032786917143-17145
ORF1ab/nsp13303R303LR5627LnonsynCGCTTG12230.024590217143-17145
ORF1ab/nsp13303R303LR5627LnonsyncGCcTA12230.024590217143-17145

Details of the mutation R303L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13303R303LcGccTc107122All0.00002
ORF1ab/nsp13303R303LcGCcTT5122All0.000001
ORF1ab/nsp13303R303LCGCTTA4122All0.000001
ORF1ab/nsp13303R303LCGCTTG3122All0.000001
ORF1ab/nsp13303R303LcGCcTA3122All0.000001
ORF1ab/nsp13303R303LcGccTc2033B.1.1.70.000018
ORF1ab/nsp13303R303LcGCcTT433B.1.1.70.000004
ORF1ab/nsp13303R303LCGCTTA433B.1.1.70.000004
ORF1ab/nsp13303R303LCGCTTG333B.1.1.70.000003
ORF1ab/nsp13303R303LcGCcTA233B.1.1.70.000002
ORF1ab/nsp13303R303LcGccTc2727AY.1030.000168
ORF1ab/nsp13303R303LcGccTc1515AY.430.000066
ORF1ab/nsp13303R303LcGccTc88AY.130.001288
ORF1ab/nsp13303R303LcGccTc66B.1.2210.000426
ORF1ab/nsp13303R303LcGccTc44AY.39.10.000158
ORF1ab/nsp13303R303LcGCcTA13AY.250.000006
ORF1ab/nsp13303R303LcGCcTT13AY.250.000006
ORF1ab/nsp13303R303LcGccTc13AY.250.000006
ORF1ab/nsp13303R303LcGccTc33B.1.177.160.001993
ORF1ab/nsp13303R303LcGccTc33B.1.20.000026
ORF1ab/nsp13303R303LcGccTc33B.1.2580.0002
ORF1ab/nsp13303R303LcGccTc33P.1.140.000143
ORF1ab/nsp13303R303LcGccTc22AY.40.000003
ORF1ab/nsp13303R303LcGccTc11AY.1200.000037
ORF1ab/nsp13303R303LcGccTc11AY.340.000097
ORF1ab/nsp13303R303LcGccTc11AY.4.20.000022
ORF1ab/nsp13303R303LcGccTc11AY.440.000006
ORF1ab/nsp13303R303LcGccTc11AY.920.000287
ORF1ab/nsp13303R303LcGccTc11B.10.000009
ORF1ab/nsp13303R303LcGccTc11B.1.1770.000013
ORF1ab/nsp13303R303LcGccTc11B.1.5260.000024
ORF1ab/nsp13303R303LcGccTc11B.1.617.20.000004
ORF1ab/nsp13303R303LcGccTc11B.1.6210.000089
ORF1ab/nsp13303R303LcGccTc11C.300.001727
ORF1ab/nsp13303R303LcGccTc11D.20.000075