CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 212 | R212R | R5536R | syn | cgA | cgG | 1107 | 689 | 0.622403 | 16870-16872 |
ORF1ab/nsp13 | 212 | R212R | R5536R | syn | Cga | Aga | 1107 | 329 | 0.2972 | 16870-16872 |
ORF1ab/nsp13 | 212 | R212R | R5536R | syn | cgA | cgC | 1107 | 63 | 0.0569106 | 16870-16872 |
ORF1ab/nsp13 | 212 | R212R | R5536R | syn | cgA | cgT | 1107 | 25 | 0.0225836 | 16870-16872 |
ORF1ab/nsp13 | 212 | R212R | R5536R | syn | CgA | AgG | 1107 | 1 | 0.000903342 | 16870-16872 |
Details of the mutation R212R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 689 | 1107 | All | 0.000132 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 329 | 1107 | All | 0.000063 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 63 | 1107 | All | 0.000012 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 25 | 1107 | All | 0.000005 |
ORF1ab/nsp13 | 212 | R212R | CgA | AgG | 1 | 1107 | All | 0 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 446 | 446 | AY.15 | 0.991111 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 76 | 76 | AY.13 | 0.012234 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 42 | 72 | B.1.617.2 | 0.000158 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 24 | 72 | B.1.617.2 | 0.00009 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 5 | 72 | B.1.617.2 | 0.000019 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 72 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 25 | 40 | B.1.1.7 | 0.000022 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 9 | 40 | B.1.1.7 | 0.000008 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 6 | 40 | B.1.1.7 | 0.000005 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 17 | 35 | AY.43 | 0.000075 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 12 | 35 | AY.43 | 0.000053 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 5 | 35 | AY.43 | 0.000022 |
ORF1ab/nsp13 | 212 | R212R | CgA | AgG | 1 | 35 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 21 | 32 | AY.4 | 0.000033 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 6 | 32 | AY.4 | 0.000009 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 3 | 32 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 2 | 32 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 23 | 32 | AY.44 | 0.00014 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 7 | 32 | AY.44 | 0.000043 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 2 | 32 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 27 | 27 | B.1.429 | 0.000635 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 17 | 22 | P.1 | 0.000268 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 5 | 22 | P.1 | 0.000079 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 21 | 21 | B.1.36.38 | 0.034483 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 21 | 21 | P.1.10 | 0.005659 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 18 | 20 | B.1.526 | 0.000423 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 2 | 20 | B.1.526 | 0.000047 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 17 | 18 | AY.100 | 0.000782 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 18 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 16 | 18 | B.1 | 0.000147 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 16 | 17 | AY.103 | 0.000099 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 17 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 17 | 17 | B.1.240 | 0.003665 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 15 | 15 | AY.105 | 0.009646 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 10 | 13 | AY.25 | 0.00006 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 2 | 13 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 13 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 5 | 12 | B.1.2 | 0.000044 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 3 | 12 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 10 | 10 | B.1.265 | 0.012706 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 7 | 8 | B.1.177 | 0.000092 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 8 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 4 | 5 | AY.3 | 0.00004 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 5 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 4 | 4 | AE.1 | 0.045455 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 3 | 3 | AY.50 | 0.002398 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 2 | 3 | AY.54 | 0.000191 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 3 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 3 | 3 | B.1.1.26 | 0.015707 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 3 | 3 | B.1.1.355 | 0.046154 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 2 | 3 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 3 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 1 | AJ.1 | 0.045455 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgC | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp13 | 212 | R212R | cgA | cgT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 212 | R212R | Cga | Aga | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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