CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 518 | Q518H | Q5842H | nonsyn | caG | caT | 5664 | 5466 | 0.965042 | 17788-17790 |
ORF1ab/nsp13 | 518 | Q518H | Q5842H | nonsyn | caG | caC | 5664 | 198 | 0.0349576 | 17788-17790 |
Details of the mutation Q518H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5466 | 5664 | All | 0.001045 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 198 | 5664 | All | 0.000038 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2249 | 2249 | AY.14 | 0.197941 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 907 | 907 | AY.117 | 0.076657 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 579 | 591 | B.1.617.2 | 0.00218 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 12 | 591 | B.1.617.2 | 0.000045 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 322 | 322 | B.1.22 | 0.424242 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 155 | 155 | B.1 | 0.00142 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 142 | 142 | AY.34.1 | 0.072412 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 120 | 126 | B.1.1.7 | 0.000107 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 6 | 126 | B.1.1.7 | 0.000005 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 54 | 108 | AY.102 | 0.001432 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 54 | 108 | AY.102 | 0.001432 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 101 | 102 | AY.4 | 0.000157 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 102 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 94 | 95 | AY.103 | 0.000584 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 95 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 56 | 84 | AY.44 | 0.000341 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 28 | 84 | AY.44 | 0.00017 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 53 | 55 | AY.85 | 0.02264 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 55 | AY.85 | 0.000854 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 50 | 50 | AY.43 | 0.000222 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 49 | 49 | AY.25 | 0.000295 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 36 | 36 | AY.16 | 0.013667 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 35 | 35 | AY.54 | 0.003337 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 33 | 33 | B.1.240.2 | 1 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 31 | 32 | AY.98.1 | 0.001501 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 32 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 32 | 32 | B.1.22.1 | 1 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 21 | 22 | AY.119 | 0.000741 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 22 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 20 | 20 | AY.29 | 0.000315 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 20 | 20 | AY.64 | 0.011905 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 16 | 16 | B.1.637 | 0.001169 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 13 | 13 | AY.61 | 0.001362 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 10 | 10 | B.1.36.33 | 0.075758 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 8 | 8 | AY.38 | 0.003994 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 6 | 6 | AY.11 | 0.008032 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 6 | 6 | B.1.1.198 | 0.008811 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 4 | 5 | B.1.525 | 0.000453 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 5 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 3 | AY.46 | 0.000208 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 3 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | AY.49 | 0.009585 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 2 | 3 | AY.84 | 0.000875 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 3 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.1.374 | 0.007126 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | B.4.6 | 0.033333 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AD.1 | 0.004115 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 518 | Q518H | caG | caC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 518 | Q518H | caG | caT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|