CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = P77Q

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1377P77QP5401QnonsyncCacAa4964940.99596816465-16467
ORF1ab/nsp1377P77QP5401QnonsyncCAcAG49620.0040322616465-16467

Details of the mutation P77Q within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1377P77QcCacAa494496All0.000094
ORF1ab/nsp1377P77QcCAcAG2496All0
ORF1ab/nsp1377P77QcCacAa309309AY.98.10.014965
ORF1ab/nsp1377P77QcCacAa132132B.1.6320.885906
ORF1ab/nsp1377P77QcCacAa77AY.370.002212
ORF1ab/nsp1377P77QcCacAa55B.10.000046
ORF1ab/nsp1377P77QcCacAa44B.1.1.70.000004
ORF1ab/nsp1377P77QcCacAa44B.1.6230.002146
ORF1ab/nsp1377P77QcCAcAG230.111111
ORF1ab/nsp1377P77QcCacAa130.055556
ORF1ab/nsp1377P77QcCacAa22AY.430.000009
ORF1ab/nsp1377P77QcCacAa22AY.46.30.001867
ORF1ab/nsp1377P77QcCacAa22AY.470.000062
ORF1ab/nsp1377P77QcCacAa22AY.90.000135
ORF1ab/nsp1377P77QcCacAa22AY.980.000158
ORF1ab/nsp1377P77QcCacAa22B.1.20.000018
ORF1ab/nsp1377P77QcCacAa22B.1.2200.021739
ORF1ab/nsp1377P77QcCacAa22B.400.000729
ORF1ab/nsp1377P77QcCacAa22B.60.00182
ORF1ab/nsp1377P77QcCacAa22Q.30.00029
ORF1ab/nsp1377P77QcCacAa11A0.000387
ORF1ab/nsp1377P77QcCacAa11AY.200.000039
ORF1ab/nsp1377P77QcCacAa11AY.30.00001
ORF1ab/nsp1377P77QcCacAa11AY.40.000002
ORF1ab/nsp1377P77QcCacAa11AY.440.000006
ORF1ab/nsp1377P77QcCacAa11AY.50.000021
ORF1ab/nsp1377P77QcCacAa11B0.000128
ORF1ab/nsp1377P77QcCacAa11B.1.1.5190.00004
ORF1ab/nsp1377P77QcCacAa11B.1.1600.000031
ORF1ab/nsp1377P77QcCacAa11B.1.2210.000071
ORF1ab/nsp1377P77QcCacAa11B.1.5960.000087
ORF1ab/nsp1377P77QcCacAa11B.1.617.20.000004

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.