CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = P504S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13504P504SP5828SnonsynCctTct748374770.99919817746-17748
ORF1ab/nsp13504P504SP5828SnonsynCcTTcC748340.00053454517746-17748
ORF1ab/nsp13504P504SP5828SnonsynCcTTcG748310.00013363617746-17748
ORF1ab/nsp13504P504SP5828SnonsynCcTTcA748310.00013363617746-17748

Details of the mutation P504S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13504P504SCctTct74777483All0.00143
ORF1ab/nsp13504P504SCcTTcC47483All0.000001
ORF1ab/nsp13504P504SCcTTcA17483All0
ORF1ab/nsp13504P504SCcTTcG17483All0
ORF1ab/nsp13504P504SCctTct10471047B.1.1.70.000937
ORF1ab/nsp13504P504SCctTct765765AY.40.001191
ORF1ab/nsp13504P504SCctTct742742B.1.617.20.002794
ORF1ab/nsp13504P504SCctTct420420AY.250.002526
ORF1ab/nsp13504P504SCctTct397397AY.1030.002465
ORF1ab/nsp13504P504SCctTct338338B.1.20.002976
ORF1ab/nsp13504P504SCctTct254254B.1.3460.332896
ORF1ab/nsp13504P504SCctTct246246AY.430.00109
ORF1ab/nsp13504P504SCctTct246246AY.440.001497
ORF1ab/nsp13504P504SCctTct224224B.1.10.004064
ORF1ab/nsp13504P504SCctTct164164AY.1020.004348
ORF1ab/nsp13504P504SCctTct140140B.1.1770.001843
ORF1ab/nsp13504P504SCctTct135135AY.4.20.002928
ORF1ab/nsp13504P504SCctTct103104B.10.000943
ORF1ab/nsp13504P504SCcTTcC1104B.10.000009
ORF1ab/nsp13504P504SCctTct9090B.1.36.360.054184
ORF1ab/nsp13504P504SCctTct8888B.1.6200.083254
ORF1ab/nsp13504P504SCctTct8585AY.420.00342
ORF1ab/nsp13504P504SCctTct7979AY.1200.002937
ORF1ab/nsp13504P504SCctTct7070P.10.001103
ORF1ab/nsp13504P504SCctTct6767B.1.2821
ORF1ab/nsp13504P504SCctTct6565AY.290.001025
ORF1ab/nsp13504P504SCctTct6060B.1.1.2240.857143
ORF1ab/nsp13504P504SCctTct5757B.1.6250.134118
ORF1ab/nsp13504P504SCctTct5656B.1.1.3340.918033
ORF1ab/nsp13504P504SCctTct5454AY.46.20.034307
ORF1ab/nsp13504P504SCctTct5252AY.200.002021
ORF1ab/nsp13504P504SCctTct5050B.1.258.170.005199
ORF1ab/nsp13504P504SCctTct4848B.1.5770.03299
ORF1ab/nsp13504P504SCctTct4747AY.30.000467
ORF1ab/nsp13504P504SCctTct4444AY.390.001087
ORF1ab/nsp13504P504SCctTct4242B.1.5960.00366
ORF1ab/nsp13504P504SCctTct4141B.1.1600.001279
ORF1ab/nsp13504P504SCctTct3838R.10.00342
ORF1ab/nsp13504P504SCctTct3636B.1.4290.000847
ORF1ab/nsp13504P504SCctTct3535B.1.5260.000823
ORF1ab/nsp13504P504SCctTct3030AY.50.000619
ORF1ab/nsp13504P504SCctTct2730B.1.2580.001797
ORF1ab/nsp13504P504SCcTTcC330B.1.2580.0002
ORF1ab/nsp13504P504SCctTct2929B.1.438.10.003111
ORF1ab/nsp13504P504SCctTct2626B.1.3510.000773
ORF1ab/nsp13504P504SCctTct2020AY.350.004661
ORF1ab/nsp13504P504SCctTct2020AY.39.10.000792
ORF1ab/nsp13504P504SCctTct1919AY.1210.002571
ORF1ab/nsp13504P504SCctTct1919B.1.36.380.031199
ORF1ab/nsp13504P504SCctTct1818B.1.2340.002375
ORF1ab/nsp13504P504SCctTct1717AY.1190.0006
ORF1ab/nsp13504P504SCctTct1717B.1.1.3180.00513
ORF1ab/nsp13504P504SCctTct1616AY.470.000498
ORF1ab/nsp13504P504SCctTct1616B.1.1.2220.003264
ORF1ab/nsp13504P504SCctTct1515AY.260.000425
ORF1ab/nsp13504P504SCctTct1515AY.340.001454
ORF1ab/nsp13504P504SCctTct1515B.1.1.2140.000832
ORF1ab/nsp13504P504SCctTct1414AY.1170.001183
ORF1ab/nsp13504P504SCctTct1414B.1.177.210.001071
ORF1ab/nsp13504P504SCctTct1414B.1.5750.004248
ORF1ab/nsp13504P504SCctTct1313AY.98.10.00063
ORF1ab/nsp13504P504SCctTct1212AY.1000.000552
ORF1ab/nsp13504P504SCctTct1212AY.29.10.002646
ORF1ab/nsp13504P504SCctTct1212B.1.1.5230.01875
ORF1ab/nsp13504P504SCctTct1212B.1.177.280.088889
ORF1ab/nsp13504P504SCctTct1111AY.1180.000689
ORF1ab/nsp13504P504SCctTct1111AY.690.002053
ORF1ab/nsp13504P504SCctTct1111B.1.5950.002871
ORF1ab/nsp13504P504SCctTct1010AY.450.001217
ORF1ab/nsp13504P504SCctTct1010AY.460.001041
ORF1ab/nsp13504P504SCctTct1010AY.750.00056
ORF1ab/nsp13504P504SCctTct1010B.1.1.1760.004394
ORF1ab/nsp13504P504SCctTct1010B.1.1.3170.004117
ORF1ab/nsp13504P504SCctTct1010B.1.1.5190.000397
ORF1ab/nsp13504P504SCctTct1010B.1.6370.000731
ORF1ab/nsp13504P504SCctTct99AY.160.003417
ORF1ab/nsp13504P504SCctTct99AY.330.000601
ORF1ab/nsp13504P504SCctTct99B.1.2210.000639
ORF1ab/nsp13504P504SCctTct99B.1.2430.000626
ORF1ab/nsp13504P504SCctTct99P.20.00168
ORF1ab/nsp13504P504SCctTct88AY.1110.001465
ORF1ab/nsp13504P504SCctTct88AY.4.2.10.001192
ORF1ab/nsp13504P504SCctTct88AY.75.10.001442
ORF1ab/nsp13504P504SCctTct88B.1.6210.000708
ORF1ab/nsp13504P504SCctTct88D.20.0006
ORF1ab/nsp13504P504SCctTct77AY.4.50.000752
ORF1ab/nsp13504P504SCctTct77AY.46.60.000505
ORF1ab/nsp13504P504SCctTct77B.1.177.480.021875
ORF1ab/nsp13504P504SCctTct77B.1.466.20.002739
ORF1ab/nsp13504P504SCctTct77B.1.617.10.000903
ORF1ab/nsp13504P504SCctTct66AY.230.000418
ORF1ab/nsp13504P504SCctTct66AY.46.40.000987
ORF1ab/nsp13504P504SCctTct66B.1.177.740.090909
ORF1ab/nsp13504P504SCctTct66B.1.1790.022556
ORF1ab/nsp13504P504SCctTct66B.1.360.000875
ORF1ab/nsp13504P504SCctTct66B.1.5640.002555
ORF1ab/nsp13504P504SCctTct55AY.1080.005513
ORF1ab/nsp13504P504SCctTct55AY.3.10.000426
ORF1ab/nsp13504P504SCctTct55AY.360.000741
ORF1ab/nsp13504P504SCctTct55AY.480.002326
ORF1ab/nsp13504P504SCctTct55AY.680.001369
ORF1ab/nsp13504P504SCctTct55B.1.1.2650.015773
ORF1ab/nsp13504P504SCctTct55B.1.1.4340.001743
ORF1ab/nsp13504P504SCctTct55B.1.177.810.000947
ORF1ab/nsp13504P504SCctTct55C.370.00058
ORF1ab/nsp13504P504SCctTct55P.1.150.001162
ORF1ab/nsp13504P504SCctTct44AD.20.000876
ORF1ab/nsp13504P504SCctTct44AY.1100.000451
ORF1ab/nsp13504P504SCctTct44AY.1130.00057
ORF1ab/nsp13504P504SCctTct44AY.16.10.00188
ORF1ab/nsp13504P504SCctTct44AY.210.00759
ORF1ab/nsp13504P504SCctTct44AY.510.003636
ORF1ab/nsp13504P504SCctTct44AY.610.000419
ORF1ab/nsp13504P504SCctTct44AY.9.20.000147
ORF1ab/nsp13504P504SCctTct44AY.910.002922
ORF1ab/nsp13504P504SCctTct44B0.000511
ORF1ab/nsp13504P504SCctTct44B.1.1.280.001245
ORF1ab/nsp13504P504SCctTct44B.1.1.3980.012903
ORF1ab/nsp13504P504SCctTct44B.1.1390.002933
ORF1ab/nsp13504P504SCctTct44B.1.3110.001098
ORF1ab/nsp13504P504SCctTct44B.1.3690.001141
ORF1ab/nsp13504P504SCctTct44B.1.5670.013333
ORF1ab/nsp13504P504SCctTct44B.1.6090.001918
ORF1ab/nsp13504P504SCctTct44P.1.140.000191
ORF1ab/nsp13504P504SCctTct33AY.1050.001929
ORF1ab/nsp13504P504SCctTct33AY.120.20.003856
ORF1ab/nsp13504P504SCctTct33AY.130.000483
ORF1ab/nsp13504P504SCctTct33AY.5.30.001012
ORF1ab/nsp13504P504SCctTct33AY.590.001589
ORF1ab/nsp13504P504SCctTct33AY.60.000123
ORF1ab/nsp13504P504SCctTct33AY.780.004622
ORF1ab/nsp13504P504SCctTct33AY.840.001312
ORF1ab/nsp13504P504SCctTct33AY.980.000237
ORF1ab/nsp13504P504SCctTct33AY.99.20.000276
ORF1ab/nsp13504P504SCctTct33B.1.1.1660.1
ORF1ab/nsp13504P504SCctTct33B.1.1.2430.012245
ORF1ab/nsp13504P504SCctTct33B.1.1.2940.003797
ORF1ab/nsp13504P504SCctTct33B.1.1.3520.09375
ORF1ab/nsp13504P504SCctTct33B.1.1.3620.016854
ORF1ab/nsp13504P504SCctTct33B.1.1.4210.090909
ORF1ab/nsp13504P504SCctTct33B.1.1110.003525
ORF1ab/nsp13504P504SCctTct33B.1.177.180.00348
ORF1ab/nsp13504P504SCctTct33B.1.177.720.010169
ORF1ab/nsp13504P504SCctTct33B.1.2390.003663
ORF1ab/nsp13504P504SCctTct33B.1.2800.021429
ORF1ab/nsp13504P504SCctTct33B.1.4270.000151
ORF1ab/nsp13504P504SCctTct33B.1.6190.002613
ORF1ab/nsp13504P504SCctTct33B.60.00273
ORF1ab/nsp13504P504SCctTct33M.10.069767
ORF1ab/nsp13504P504SCctTct33P.1.170.000485
ORF1ab/nsp13504P504SCctTct22AY.100.00106
ORF1ab/nsp13504P504SCctTct22AY.1070.000932
ORF1ab/nsp13504P504SCctTct22AY.1090.001479
ORF1ab/nsp13504P504SCctTct22AY.1140.000462
ORF1ab/nsp13504P504SCctTct22AY.120.000632
ORF1ab/nsp13504P504SCctTct22AY.23.10.000835
ORF1ab/nsp13504P504SCctTct22AY.300.000791
ORF1ab/nsp13504P504SCctTct22AY.34.10.00102
ORF1ab/nsp13504P504SCctTct22AY.550.001835
ORF1ab/nsp13504P504SCctTct22AY.7.10.000225
ORF1ab/nsp13504P504SCctTct22AY.710.00095
ORF1ab/nsp13504P504SCctTct22AY.9.10.000167
ORF1ab/nsp13504P504SCctTct22B.1.1.1530.002191
ORF1ab/nsp13504P504SCctTct22B.1.1.3050.007722
ORF1ab/nsp13504P504SCctTct22B.1.1.3750.02381
ORF1ab/nsp13504P504SCctTct22B.1.1.460.008734
ORF1ab/nsp13504P504SCctTct22B.1.1.700.000682
ORF1ab/nsp13504P504SCctTct22B.1.1.860.071429
ORF1ab/nsp13504P504SCctTct22B.1.1570.00597
ORF1ab/nsp13504P504SCctTct22B.1.177.120.000303
ORF1ab/nsp13504P504SCctTct22B.1.177.40.000422
ORF1ab/nsp13504P504SCctTct22B.1.177.440.001038
ORF1ab/nsp13504P504SCctTct22B.1.177.560.001335
ORF1ab/nsp13504P504SCctTct22B.1.177.80.001505
ORF1ab/nsp13504P504SCctTct22B.1.177.860.000367
ORF1ab/nsp13504P504SCctTct22B.1.214.20.001199
ORF1ab/nsp13504P504SCctTct22B.1.2320.001075
ORF1ab/nsp13504P504SCctTct22B.1.2400.000431
ORF1ab/nsp13504P504SCctTct22B.1.3490.00143
ORF1ab/nsp13504P504SCctTct22B.1.36.290.001035
ORF1ab/nsp13504P504SCctTct22B.1.3960.001411
ORF1ab/nsp13504P504SCctTct22B.1.4990.002101
ORF1ab/nsp13504P504SCctTct22B.1.5510.002581
ORF1ab/nsp13504P504SCctTct22P.1.100.000539
ORF1ab/nsp13504P504SCctTct11A.2.50.000499
ORF1ab/nsp13504P504SCctTct11A.270.001656
ORF1ab/nsp13504P504SCctTct11AY.10.000396
ORF1ab/nsp13504P504SCctTct11AY.110.001339
ORF1ab/nsp13504P504SCctTct11AY.120.10.000321
ORF1ab/nsp13504P504SCctTct11AY.240.000431
ORF1ab/nsp13504P504SCctTct11AY.270.000065
ORF1ab/nsp13504P504SCctTct11AY.370.000316
ORF1ab/nsp13504P504SCctTct11AY.4.40.000409
ORF1ab/nsp13504P504SCctTct11AY.46.10.001027
ORF1ab/nsp13504P504SCctTct11AY.5.40.000277
ORF1ab/nsp13504P504SCctTct11AY.520.000814
ORF1ab/nsp13504P504SCctTct11AY.530.000288
ORF1ab/nsp13504P504SCctTct11AY.540.000095
ORF1ab/nsp13504P504SCctTct11AY.600.000938
ORF1ab/nsp13504P504SCctTct11AY.640.000595
ORF1ab/nsp13504P504SCctTct11AY.650.000533
ORF1ab/nsp13504P504SCcTTcG11AY.670.000464
ORF1ab/nsp13504P504SCctTct11AY.70.000196
ORF1ab/nsp13504P504SCctTct11AY.720.001361
ORF1ab/nsp13504P504SCctTct11AY.740.000116
ORF1ab/nsp13504P504SCctTct11AY.800.001129
ORF1ab/nsp13504P504SCcTTcA11AY.850.000427
ORF1ab/nsp13504P504SCctTct11AY.880.000884
ORF1ab/nsp13504P504SCctTct11AY.920.000287
ORF1ab/nsp13504P504SCctTct11AY.930.000273
ORF1ab/nsp13504P504SCctTct11AY.950.000761
ORF1ab/nsp13504P504SCctTct11AZ.30.00152
ORF1ab/nsp13504P504SCctTct11B.1.1.10.000327
ORF1ab/nsp13504P504SCctTct11B.1.1.100.001115
ORF1ab/nsp13504P504SCctTct11B.1.1.1180.010204
ORF1ab/nsp13504P504SCctTct11B.1.1.1210.002427
ORF1ab/nsp13504P504SCctTct11B.1.1.2070.001182
ORF1ab/nsp13504P504SCctTct11B.1.1.2370.005405
ORF1ab/nsp13504P504SCctTct11B.1.1.2410.00207
ORF1ab/nsp13504P504SCctTct11B.1.1.250.000569
ORF1ab/nsp13504P504SCctTct11B.1.1.2850.006536
ORF1ab/nsp13504P504SCctTct11B.1.1.3080.011765
ORF1ab/nsp13504P504SCctTct11B.1.1.3200.018182
ORF1ab/nsp13504P504SCctTct11B.1.1.3290.003846
ORF1ab/nsp13504P504SCctTct11B.1.1.3360.016667
ORF1ab/nsp13504P504SCctTct11B.1.1.340.013158
ORF1ab/nsp13504P504SCctTct11B.1.1.3600.03125
ORF1ab/nsp13504P504SCctTct11B.1.1.370.000193
ORF1ab/nsp13504P504SCctTct11B.1.1.390.00051
ORF1ab/nsp13504P504SCctTct11B.1.1.3970.002252
ORF1ab/nsp13504P504SCctTct11B.1.1.40.002976
ORF1ab/nsp13504P504SCctTct11B.1.1.4090.002833
ORF1ab/nsp13504P504SCctTct11B.1.1.4160.000905
ORF1ab/nsp13504P504SCctTct11B.1.1.4580.041667
ORF1ab/nsp13504P504SCctTct11B.1.1.4860.001577
ORF1ab/nsp13504P504SCctTct11B.1.1.5260.003546
ORF1ab/nsp13504P504SCctTct11B.1.1.630.000386
ORF1ab/nsp13504P504SCctTct11B.1.1040.00369
ORF1ab/nsp13504P504SCctTct11B.1.1280.000635
ORF1ab/nsp13504P504SCctTct11B.1.1470.000756
ORF1ab/nsp13504P504SCctTct11B.1.160.300.002976
ORF1ab/nsp13504P504SCctTct11B.1.177.170.000821
ORF1ab/nsp13504P504SCctTct11B.1.177.190.001431
ORF1ab/nsp13504P504SCctTct11B.1.177.290.066667
ORF1ab/nsp13504P504SCctTct11B.1.177.420.000894
ORF1ab/nsp13504P504SCctTct11B.1.177.450.000381
ORF1ab/nsp13504P504SCctTct11B.1.177.500.004695
ORF1ab/nsp13504P504SCctTct11B.1.177.60.000977
ORF1ab/nsp13504P504SCctTct11B.1.177.620.001192
ORF1ab/nsp13504P504SCctTct11B.1.177.750.001041
ORF1ab/nsp13504P504SCctTct11B.1.177.820.000477
ORF1ab/nsp13504P504SCctTct11B.1.177.840.006667
ORF1ab/nsp13504P504SCctTct11B.1.177.90.001332
ORF1ab/nsp13504P504SCctTct11B.1.2180.005155
ORF1ab/nsp13504P504SCctTct11B.1.3130.006579
ORF1ab/nsp13504P504SCctTct11B.1.3240.001605
ORF1ab/nsp13504P504SCctTct11B.1.3360.002439
ORF1ab/nsp13504P504SCctTct11B.1.351.30.000876
ORF1ab/nsp13504P504SCctTct11B.1.36.10.00114
ORF1ab/nsp13504P504SCctTct11B.1.36.100.004785
ORF1ab/nsp13504P504SCctTct11B.1.36.160.001425
ORF1ab/nsp13504P504SCctTct11B.1.36.170.000494
ORF1ab/nsp13504P504SCctTct11B.1.36.220.001208
ORF1ab/nsp13504P504SCctTct11B.1.36.80.001
ORF1ab/nsp13504P504SCctTct11B.1.3750.00082
ORF1ab/nsp13504P504SCctTct11B.1.4090.000781
ORF1ab/nsp13504P504SCctTct11B.1.4110.003704
ORF1ab/nsp13504P504SCctTct11B.1.4240.008065
ORF1ab/nsp13504P504SCctTct11B.1.438.20.019231
ORF1ab/nsp13504P504SCctTct11B.1.4680.005714
ORF1ab/nsp13504P504SCctTct11B.1.5400.009709
ORF1ab/nsp13504P504SCctTct11B.1.5820.000491
ORF1ab/nsp13504P504SCctTct11B.1.619.10.000641
ORF1ab/nsp13504P504SCctTct11B.1.6280.000352
ORF1ab/nsp13504P504SCctTct11B.1.9.50.005682
ORF1ab/nsp13504P504SCctTct11B.380.02381
ORF1ab/nsp13504P504SCctTct11B.400.000364
ORF1ab/nsp13504P504SCctTct11C.350.000774
ORF1ab/nsp13504P504SCctTct11C.360.000911
ORF1ab/nsp13504P504SCctTct11C.36.3.10.002717
ORF1ab/nsp13504P504SCctTct11C.80.004464
ORF1ab/nsp13504P504SCctTct11N.40.004255
ORF1ab/nsp13504P504SCctTct11P.1.120.000484
ORF1ab/nsp13504P504SCctTct11P.1.70.000319
ORF1ab/nsp13504P504SCctTct11P.30.001595
ORF1ab/nsp13504P504SCctTct11Q.20.000613
ORF1ab/nsp13504P504SCctTct11Q.80.000165
ORF1ab/nsp13504P504SCctTct11W.10.008696
ORF1ab/nsp13504P504SCctTct11W.40.001351