CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = P47S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1347P47SP5371SnonsynCcgTcg493649280.99837916375-16377
ORF1ab/nsp1347P47SP5371SnonsynCcGTcA493640.00081037316375-16377
ORF1ab/nsp1347P47SP5371SnonsynCcGTcT493630.0006077816375-16377
ORF1ab/nsp1347P47SP5371SnonsynCcGTcC493610.00020259316375-16377

Details of the mutation P47S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1347P47SCcgTcg49284936All0.000943
ORF1ab/nsp1347P47SCcGTcA44936All0.000001
ORF1ab/nsp1347P47SCcGTcT34936All0.000001
ORF1ab/nsp1347P47SCcGTcC14936All0
ORF1ab/nsp1347P47SCcgTcg32363238B.1.5750.981796
ORF1ab/nsp1347P47SCcGTcA23238B.1.5750.000607
ORF1ab/nsp1347P47SCcgTcg618618B.1.1.70.000553
ORF1ab/nsp1347P47SCcgTcg392392B.1.575.10.956098
ORF1ab/nsp1347P47SCcgTcg208208B.1.575.21
ORF1ab/nsp1347P47SCcgTcg100101B.10.000916
ORF1ab/nsp1347P47SCcGTcT1101B.10.000009
ORF1ab/nsp1347P47SCcgTcg4040B.1.4270.00202
ORF1ab/nsp1347P47SCcgTcg2424B.1.5950.006263
ORF1ab/nsp1347P47SCcgTcg2121B.1.1.3510.058659
ORF1ab/nsp1347P47SCcgTcg1616B.1.10.00029
ORF1ab/nsp1347P47SCcgTcg1616B.1.1600.000499
ORF1ab/nsp1347P47SCcgTcg1616B.1.20.000141
ORF1ab/nsp1347P47SCcgTcg1313B.1.2580.000865
ORF1ab/nsp1347P47SCcgTcg1212B.1.1390.008798
ORF1ab/nsp1347P47SCcgTcg5100.277778
ORF1ab/nsp1347P47SCcGTcT2100.111111
ORF1ab/nsp1347P47SCcGTcA2100.111111
ORF1ab/nsp1347P47SCcGTcC1100.055556
ORF1ab/nsp1347P47SCcgTcg99AY.350.002097
ORF1ab/nsp1347P47SCcgTcg99B.1.1770.000119
ORF1ab/nsp1347P47SCcgTcg88AY.40.000012
ORF1ab/nsp1347P47SCcgTcg77A.20.004633
ORF1ab/nsp1347P47SCcgTcg77B.1.1.1860.024055
ORF1ab/nsp1347P47SCcgTcg77D.20.000525
ORF1ab/nsp1347P47SCcgTcg66AY.440.000037
ORF1ab/nsp1347P47SCcgTcg55AY.1030.000031
ORF1ab/nsp1347P47SCcgTcg55AY.260.000142
ORF1ab/nsp1347P47SCcgTcg55AY.430.000022
ORF1ab/nsp1347P47SCcgTcg55B.1.2430.000348
ORF1ab/nsp1347P47SCcgTcg55B.1.617.20.000019
ORF1ab/nsp1347P47SCcgTcg55Q.30.000725
ORF1ab/nsp1347P47SCcgTcg44A.2.40.013468
ORF1ab/nsp1347P47SCcgTcg44AY.30.00004
ORF1ab/nsp1347P47SCcgTcg44B.1.1.2140.000222
ORF1ab/nsp1347P47SCcgTcg44B.1.3510.000119
ORF1ab/nsp1347P47SCcgTcg44B.1.5170.001708
ORF1ab/nsp1347P47SCcgTcg44B.1.6210.000354
ORF1ab/nsp1347P47SCcgTcg44B.400.001457
ORF1ab/nsp1347P47SCcgTcg44P.10.000063
ORF1ab/nsp1347P47SCcgTcg33AY.1190.000106
ORF1ab/nsp1347P47SCcgTcg33B.1.1.5190.000119
ORF1ab/nsp1347P47SCcgTcg33B.1.3690.000856
ORF1ab/nsp1347P47SCcgTcg33B.1.4480.007874
ORF1ab/nsp1347P47SCcgTcg33B.1.5260.000071
ORF1ab/nsp1347P47SCcgTcg22A0.000774
ORF1ab/nsp1347P47SCcgTcg22A.10.000564
ORF1ab/nsp1347P47SCcgTcg22AW.10.006098
ORF1ab/nsp1347P47SCcgTcg22AY.1020.000053
ORF1ab/nsp1347P47SCcgTcg22AY.60.000082
ORF1ab/nsp1347P47SCcgTcg22B0.000256
ORF1ab/nsp1347P47SCcgTcg22B.1.1.2770.001517
ORF1ab/nsp1347P47SCcgTcg22B.1.1.4340.000697
ORF1ab/nsp1347P47SCcgTcg22B.1.1.480.005747
ORF1ab/nsp1347P47SCcgTcg22B.1.177.600.000437
ORF1ab/nsp1347P47SCcgTcg22B.1.177.730.001133
ORF1ab/nsp1347P47SCcgTcg22B.1.4970.00063
ORF1ab/nsp1347P47SCcgTcg22B.1.619.10.001283
ORF1ab/nsp1347P47SCcgTcg22B.390.004662
ORF1ab/nsp1347P47SCcgTcg22B.550.0059
ORF1ab/nsp1347P47SCcgTcg11A.2.50.000499
ORF1ab/nsp1347P47SCcgTcg11A.40.012821
ORF1ab/nsp1347P47SCcgTcg11A.50.001923
ORF1ab/nsp1347P47SCcgTcg11A.60.005128
ORF1ab/nsp1347P47SCcgTcg11AY.1000.000046
ORF1ab/nsp1347P47SCcgTcg11AY.3.10.000085
ORF1ab/nsp1347P47SCcgTcg11AY.360.000148
ORF1ab/nsp1347P47SCcgTcg11AY.390.000025
ORF1ab/nsp1347P47SCcgTcg11AY.5.30.000337
ORF1ab/nsp1347P47SCcgTcg11B.1.1.10.000327
ORF1ab/nsp1347P47SCcgTcg11B.1.1.1570.000913
ORF1ab/nsp1347P47SCcgTcg11B.1.1.2130.021739
ORF1ab/nsp1347P47SCcgTcg11B.1.1.2200.001859
ORF1ab/nsp1347P47SCcgTcg11B.1.1.250.000569
ORF1ab/nsp1347P47SCcgTcg11B.1.1.2840.000107
ORF1ab/nsp1347P47SCcgTcg11B.1.1.2990.012195
ORF1ab/nsp1347P47SCcgTcg11B.1.1.3080.011765
ORF1ab/nsp1347P47SCcgTcg11B.1.1.330.000421
ORF1ab/nsp1347P47SCcgTcg11B.1.1.3710.010417
ORF1ab/nsp1347P47SCcgTcg11B.1.1.4130.006897
ORF1ab/nsp1347P47SCcgTcg11B.1.1.4170.002703
ORF1ab/nsp1347P47SCcgTcg11B.1.1.4370.010417
ORF1ab/nsp1347P47SCcgTcg11B.1.1.4480.002033
ORF1ab/nsp1347P47SCcgTcg11B.1.1.4530.008475
ORF1ab/nsp1347P47SCcgTcg11B.1.160.160.000929
ORF1ab/nsp1347P47SCcgTcg11B.1.160.80.001289
ORF1ab/nsp1347P47SCcgTcg11B.1.177.150.000631
ORF1ab/nsp1347P47SCcgTcg11B.1.177.60.000977
ORF1ab/nsp1347P47SCcgTcg11B.1.177.70.000165
ORF1ab/nsp1347P47SCcgTcg11B.1.177.740.015152
ORF1ab/nsp1347P47SCcgTcg11B.1.177.770.000726
ORF1ab/nsp1347P47SCcgTcg11B.1.2100.002132
ORF1ab/nsp1347P47SCcgTcg11B.1.3200.001245
ORF1ab/nsp1347P47SCcgTcg11B.1.3250.006897
ORF1ab/nsp1347P47SCcgTcg11B.1.36.290.000517
ORF1ab/nsp1347P47SCcgTcg11B.1.3670.000792
ORF1ab/nsp1347P47SCcgTcg11B.1.3710.001122
ORF1ab/nsp1347P47SCcgTcg11B.1.3750.00082
ORF1ab/nsp1347P47SCcgTcg11B.1.3990.001934
ORF1ab/nsp1347P47SCcgTcg11B.1.4210.007463
ORF1ab/nsp1347P47SCcgTcg11B.1.4290.000024
ORF1ab/nsp1347P47SCcgTcg11B.1.5050.004386
ORF1ab/nsp1347P47SCcgTcg11B.1.617.10.000129
ORF1ab/nsp1347P47SCcgTcg11B.290.003509
ORF1ab/nsp1347P47SCcgTcg11B.3.10.001658
ORF1ab/nsp1347P47SCcgTcg11B.310.003731
ORF1ab/nsp1347P47SCcgTcg11B.330.021277
ORF1ab/nsp1347P47SCcgTcg11B.40.002208
ORF1ab/nsp1347P47SCcgTcg11B.60.00091
ORF1ab/nsp1347P47SCcgTcg11C.370.000116
ORF1ab/nsp1347P47SCcgTcg11P.1.140.000048