CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = N503N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13503N503NN5827NsynaaCaaT74687468117743-17745

Details of the mutation N503N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13503N503NaaCaaT74687468All0.001428
ORF1ab/nsp13503N503NaaCaaT30793079P.10.048507
ORF1ab/nsp13503N503NaaCaaT13941394A.23.10.98169
ORF1ab/nsp13503N503NaaCaaT532532B.1.1.70.000476
ORF1ab/nsp13503N503NaaCaaT274274AY.90.018521
ORF1ab/nsp13503N503NaaCaaT199199AY.40.00031
ORF1ab/nsp13503N503NaaCaaT184184B.1.1.2040.559271
ORF1ab/nsp13503N503NaaCaaT184184B.1.20.00162
ORF1ab/nsp13503N503NaaCaaT133133B.1.3510.003954
ORF1ab/nsp13503N503NaaCaaT9191A.230.957895
ORF1ab/nsp13503N503NaaCaaT9090B.10.000824
ORF1ab/nsp13503N503NaaCaaT7171B.1.36.160.10114
ORF1ab/nsp13503N503NaaCaaT6969AY.440.00042
ORF1ab/nsp13503N503NaaCaaT6969B.1.617.20.00026
ORF1ab/nsp13503N503NaaCaaT6565AY.5.30.02193
ORF1ab/nsp13503N503NaaCaaT5656B.1.1.5190.002224
ORF1ab/nsp13503N503NaaCaaT5151AY.1030.000317
ORF1ab/nsp13503N503NaaCaaT4343P.1.120.020813
ORF1ab/nsp13503N503NaaCaaT3939B.1.1600.001216
ORF1ab/nsp13503N503NaaCaaT3434B.1.10.000617
ORF1ab/nsp13503N503NaaCaaT3434B.1.4290.0008
ORF1ab/nsp13503N503NaaCaaT3232B.1.1770.000421
ORF1ab/nsp13503N503NaaCaaT3131B.1.3670.024564
ORF1ab/nsp13503N503NaaCaaT2929AY.430.000128
ORF1ab/nsp13503N503NaaCaaT2929AY.60.001193
ORF1ab/nsp13503N503NaaCaaT2828AY.30.000278
ORF1ab/nsp13503N503NaaCaaT2626AY.330.001736
ORF1ab/nsp13503N503NaaCaaT2525AY.250.00015
ORF1ab/nsp13503N503NaaCaaT2424AY.540.002288
ORF1ab/nsp13503N503NaaCaaT2323P.1.160.008605
ORF1ab/nsp13503N503NaaCaaT2121AY.370.006637
ORF1ab/nsp13503N503NaaCaaT2121B.1.36.190.194444
ORF1ab/nsp13503N503NaaCaaT1919B.1.5260.000447
ORF1ab/nsp13503N503NaaCaaT1818AY.200.0007
ORF1ab/nsp13503N503NaaCaaT1717AY.460.001769
ORF1ab/nsp13503N503NaaCaaT1515AP.10.022523
ORF1ab/nsp13503N503NaaCaaT1515AY.1020.000398
ORF1ab/nsp13503N503NaaCaaT1414AY.390.000346
ORF1ab/nsp13503N503NaaCaaT1414D.20.001051
ORF1ab/nsp13503N503NaaCaaT1313P.1.10.00413
ORF1ab/nsp13503N503NaaCaaT1212AY.290.000189
ORF1ab/nsp13503N503NaaCaaT1212B.1.3910.013529
ORF1ab/nsp13503N503NaaCaaT1212B.1.6210.001062
ORF1ab/nsp13503N503NaaCaaT1111R.10.00099
ORF1ab/nsp13503N503NaaCaaT99A0.003483
ORF1ab/nsp13503N503NaaCaaT99AY.99.20.000829
ORF1ab/nsp13503N503NaaCaaT99B.1.177.860.001651
ORF1ab/nsp13503N503NaaCaaT99B.1.5960.000784
ORF1ab/nsp13503N503NaaCaaT88AY.1190.000282
ORF1ab/nsp13503N503NaaCaaT88B.1.1.2140.000444
ORF1ab/nsp13503N503NaaCaaT88B.1.1.3050.030888
ORF1ab/nsp13503N503NaaCaaT88B.1.177.100.007024
ORF1ab/nsp13503N503NaaCaaT88B.1.6370.000585
ORF1ab/nsp13503N503NaaCaaT77AY.260.000198
ORF1ab/nsp13503N503NaaCaaT77B.1.1.2220.001428
ORF1ab/nsp13503N503NaaCaaT77B.1.438.10.000751
ORF1ab/nsp13503N503NaaCaaT77B.1.4700.009831
ORF1ab/nsp13503N503NaaCaaT77P.1.150.001626
ORF1ab/nsp13503N503NaaCaaT66AY.1000.000276
ORF1ab/nsp13503N503NaaCaaT66B.1.5170.002562
ORF1ab/nsp13503N503NaaCaaT55AY.46.40.000823
ORF1ab/nsp13503N503NaaCaaT55AY.470.000156
ORF1ab/nsp13503N503NaaCaaT44AY.50.000083
ORF1ab/nsp13503N503NaaCaaT44B.1.177.210.000306
ORF1ab/nsp13503N503NaaCaaT44B.1.177.600.000874
ORF1ab/nsp13503N503NaaCaaT33A.2.5.10.014423
ORF1ab/nsp13503N503NaaCaaT33AY.1210.000406
ORF1ab/nsp13503N503NaaCaaT33AY.230.000209
ORF1ab/nsp13503N503NaaCaaT33AY.640.001786
ORF1ab/nsp13503N503NaaCaaT33AY.880.002653
ORF1ab/nsp13503N503NaaCaaT33AY.980.000237
ORF1ab/nsp13503N503NaaCaaT33B.1.1.1760.001318
ORF1ab/nsp13503N503NaaCaaT33B.1.1.280.000934
ORF1ab/nsp13503N503NaaCaaT33B.1.1.3180.000905
ORF1ab/nsp13503N503NaaCaaT33B.1.177.810.000568
ORF1ab/nsp13503N503NaaCaaT33B.1.36.290.001552
ORF1ab/nsp13503N503NaaCaaT33C.1.20.012766
ORF1ab/nsp13503N503NaaCaaT33P.1.170.000485
ORF1ab/nsp13503N503NaaCaaT22AY.1140.000462
ORF1ab/nsp13503N503NaaCaaT22AY.1200.000074
ORF1ab/nsp13503N503NaaCaaT22AY.130.000322
ORF1ab/nsp13503N503NaaCaaT22AY.160.000759
ORF1ab/nsp13503N503NaaCaaT22AY.270.000129
ORF1ab/nsp13503N503NaaCaaT22AY.400.001929
ORF1ab/nsp13503N503NaaCaaT22AY.450.000243
ORF1ab/nsp13503N503NaaCaaT22AY.46.60.000144
ORF1ab/nsp13503N503NaaCaaT22AY.7.20.001119
ORF1ab/nsp13503N503NaaCaaT22AZ.20.001642
ORF1ab/nsp13503N503NaaCaaT22B.1.1.10.000653
ORF1ab/nsp13503N503NaaCaaT22B.1.1.1900.1
ORF1ab/nsp13503N503NaaCaaT22B.1.1.2550.006061
ORF1ab/nsp13503N503NaaCaaT22B.1.1950.01005
ORF1ab/nsp13503N503NaaCaaT22B.1.2340.000264
ORF1ab/nsp13503N503NaaCaaT22B.1.2400.000431
ORF1ab/nsp13503N503NaaCaaT22B.1.360.000292
ORF1ab/nsp13503N503NaaCaaT22B.1.5640.000852
ORF1ab/nsp13503N503NaaCaaT22B.1.6360.013423
ORF1ab/nsp13503N503NaaCaaT22P.1.100.000539
ORF1ab/nsp13503N503NaaCaaT22P.1.140.000096
ORF1ab/nsp13503N503NaaCaaT22P.20.000373
ORF1ab/nsp13503N503NaaCaaT11A.10.000282
ORF1ab/nsp13503N503NaaCaaT11A.20.000662
ORF1ab/nsp13503N503NaaCaaT11AY.1100.000113
ORF1ab/nsp13503N503NaaCaaT11AY.1160.000287
ORF1ab/nsp13503N503NaaCaaT11AY.1170.000085
ORF1ab/nsp13503N503NaaCaaT11AY.3.10.000085
ORF1ab/nsp13503N503NaaCaaT11AY.350.000233
ORF1ab/nsp13503N503NaaCaaT11AY.4.20.000022
ORF1ab/nsp13503N503NaaCaaT11AY.4.50.000107
ORF1ab/nsp13503N503NaaCaaT11AY.420.00004
ORF1ab/nsp13503N503NaaCaaT11AY.46.50.000198
ORF1ab/nsp13503N503NaaCaaT11AY.5.40.000277
ORF1ab/nsp13503N503NaaCaaT11AY.510.000909
ORF1ab/nsp13503N503NaaCaaT11AY.520.000814
ORF1ab/nsp13503N503NaaCaaT11AY.530.000288
ORF1ab/nsp13503N503NaaCaaT11AY.610.000105
ORF1ab/nsp13503N503NaaCaaT11AY.620.000436
ORF1ab/nsp13503N503NaaCaaT11AY.7.10.000113
ORF1ab/nsp13503N503NaaCaaT11AY.710.000475
ORF1ab/nsp13503N503NaaCaaT11AY.750.000056
ORF1ab/nsp13503N503NaaCaaT11AY.75.10.00018
ORF1ab/nsp13503N503NaaCaaT11AY.840.000437
ORF1ab/nsp13503N503NaaCaaT11AY.9.10.000084
ORF1ab/nsp13503N503NaaCaaT11AY.910.00073
ORF1ab/nsp13503N503NaaCaaT11AY.970.001701
ORF1ab/nsp13503N503NaaCaaT11B0.000128
ORF1ab/nsp13503N503NaaCaaT11B.1.1.1330.008475
ORF1ab/nsp13503N503NaaCaaT11B.1.1.1570.000913
ORF1ab/nsp13503N503NaaCaaT11B.1.1.2160.00089
ORF1ab/nsp13503N503NaaCaaT11B.1.1.2360.006897
ORF1ab/nsp13503N503NaaCaaT11B.1.1.270.00565
ORF1ab/nsp13503N503NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3260.001761
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3300.0625
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3340.016393
ORF1ab/nsp13503N503NaaCaaT11B.1.1.340.013158
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3510.002793
ORF1ab/nsp13503N503NaaCaaT11B.1.1.370.000193
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3960.045455
ORF1ab/nsp13503N503NaaCaaT11B.1.1.3970.002252
ORF1ab/nsp13503N503NaaCaaT11B.1.1.4090.002833
ORF1ab/nsp13503N503NaaCaaT11B.1.1.5070.008696
ORF1ab/nsp13503N503NaaCaaT11B.1.1.5260.003546
ORF1ab/nsp13503N503NaaCaaT11B.1.1.5280.004808
ORF1ab/nsp13503N503NaaCaaT11B.1.1.540.003021
ORF1ab/nsp13503N503NaaCaaT11B.1.1260.001276
ORF1ab/nsp13503N503NaaCaaT11B.1.160.140.002119
ORF1ab/nsp13503N503NaaCaaT11B.1.160.230.004831
ORF1ab/nsp13503N503NaaCaaT11B.1.177.330.001645
ORF1ab/nsp13503N503NaaCaaT11B.1.177.40.000211
ORF1ab/nsp13503N503NaaCaaT11B.1.177.540.000606
ORF1ab/nsp13503N503NaaCaaT11B.1.177.570.000281
ORF1ab/nsp13503N503NaaCaaT11B.1.177.770.000726
ORF1ab/nsp13503N503NaaCaaT11B.1.1920.009259
ORF1ab/nsp13503N503NaaCaaT11B.1.2060.000816
ORF1ab/nsp13503N503NaaCaaT11B.1.2100.002132
ORF1ab/nsp13503N503NaaCaaT11B.1.2390.001221
ORF1ab/nsp13503N503NaaCaaT11B.1.2430.00007
ORF1ab/nsp13503N503NaaCaaT11B.1.2580.000067
ORF1ab/nsp13503N503NaaCaaT11B.1.258.170.000104
ORF1ab/nsp13503N503NaaCaaT11B.1.2840.013158
ORF1ab/nsp13503N503NaaCaaT11B.1.30.002618
ORF1ab/nsp13503N503NaaCaaT11B.1.3410.022727
ORF1ab/nsp13503N503NaaCaaT11B.1.3460.001311
ORF1ab/nsp13503N503NaaCaaT11B.1.36.10.00114
ORF1ab/nsp13503N503NaaCaaT11B.1.36.180.00042
ORF1ab/nsp13503N503NaaCaaT11B.1.3890.001002
ORF1ab/nsp13503N503NaaCaaT11B.1.3960.000706
ORF1ab/nsp13503N503NaaCaaT11B.1.4270.00005
ORF1ab/nsp13503N503NaaCaaT11B.1.4800.002488
ORF1ab/nsp13503N503NaaCaaT11B.1.5490.007194
ORF1ab/nsp13503N503NaaCaaT11B.1.5760.000907
ORF1ab/nsp13503N503NaaCaaT11B.1.5870.001898
ORF1ab/nsp13503N503NaaCaaT11B.1.5950.000261
ORF1ab/nsp13503N503NaaCaaT11B.1.6090.000479
ORF1ab/nsp13503N503NaaCaaT11B.1.617.10.000129
ORF1ab/nsp13503N503NaaCaaT11B.1.6200.000946
ORF1ab/nsp13503N503NaaCaaT11B.1.621.10.000506
ORF1ab/nsp13503N503NaaCaaT11B.1.6230.000536
ORF1ab/nsp13503N503NaaCaaT11B.1.6250.002353
ORF1ab/nsp13503N503NaaCaaT11B.1.6310.003367
ORF1ab/nsp13503N503NaaCaaT11B.4.70.010101
ORF1ab/nsp13503N503NaaCaaT11B.400.000364
ORF1ab/nsp13503N503NaaCaaT11B.550.00295
ORF1ab/nsp13503N503NaaCaaT11C.36.3.10.002717
ORF1ab/nsp13503N503NaaCaaT11P.1.10.10.00813
ORF1ab/nsp13503N503NaaCaaT11P.1.80.004785
ORF1ab/nsp13503N503NaaCaaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.