CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 257 | N257N | N5581N | syn | aaT | aaC | 1748 | 1748 | 1 | 17005-17007 |
Details of the mutation N257N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1748 | 1748 | All | 0.000334 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 648 | 648 | B.1.1.7 | 0.00058 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 193 | 193 | AY.4 | 0.0003 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 184 | 184 | B.1.526 | 0.004325 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 88 | 88 | AY.75 | 0.00493 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 79 | 79 | AK.1 | 1 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 55 | 55 | AY.103 | 0.000341 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 38 | 38 | B.1.177 | 0.0005 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 31 | 31 | B.1.258 | 0.002063 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 21 | 21 | P.6 | 0.066038 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 11 | 11 | B.1.1.39 | 0.005607 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 4 | 4 | B.1.1.512 | 0.114286 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | B.1.1.54 | 0.009063 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.611 | 0.04 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | C.22 | 0.071429 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 257 | N257N | aaT | aaC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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