CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 581 | L581F | L5905F | nonsyn | Ctt | Ttt | 12437 | 12437 | 1 | 17977-17979 |
Details of the mutation L581F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 12437 | 12437 | All | 0.002379 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4634 | 4634 | B.1.1.7 | 0.004148 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1828 | 1828 | B.1.36.18 | 0.768067 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 875 | 875 | AY.4 | 0.001362 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 399 | 399 | B.1.617.2 | 0.001502 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 389 | 389 | B.1.596 | 0.033897 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 311 | 311 | B.1.621 | 0.027529 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 266 | 266 | AD.2 | 0.058244 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 259 | 259 | B.1.429 | 0.006094 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 215 | 215 | AY.43 | 0.000953 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 195 | 195 | B.1.2 | 0.001717 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 194 | 194 | B.1 | 0.001777 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 130 | 130 | B.1.1.519 | 0.005162 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 126 | 126 | AY.44 | 0.000767 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 118 | 118 | AY.119 | 0.004166 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 116 | 116 | P.1 | 0.001827 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 110 | 110 | AY.25 | 0.000662 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 106 | 106 | AY.4.2 | 0.002299 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 78 | 78 | AY.103 | 0.000484 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 77 | 77 | B.1.1 | 0.001397 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 76 | 76 | AY.33 | 0.005075 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 75 | 75 | B.1.36.21 | 0.161987 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 73 | 73 | B.1.177 | 0.000961 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 61 | 61 | AY.115 | 0.317708 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 61 | 61 | B.1.258 | 0.004059 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 60 | 60 | AY.113 | 0.008543 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 59 | 59 | AY.102 | 0.001564 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 55 | 55 | B.1.351 | 0.001635 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 53 | 53 | AY.4.3 | 0.044613 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 47 | 47 | B.1.1.329 | 0.180769 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 46 | 46 | AY.3 | 0.000458 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 41 | 41 | AY.39 | 0.001013 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 39 | 39 | B.1.595 | 0.010177 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 37 | 37 | B.1.525 | 0.004187 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 37 | 37 | B.1.526 | 0.00087 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 37 | 37 | B.1.617.1 | 0.004772 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 36 | 36 | B.1.1.214 | 0.001996 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 35 | 35 | B.1.243 | 0.002435 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 27 | 27 | B.1.637 | 0.001973 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 26 | 26 | Q.8 | 0.004288 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 23 | 23 | AY.23 | 0.001604 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 23 | 23 | B.1.36 | 0.003356 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 22 | 22 | AY.120 | 0.000818 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 22 | 22 | B.1.438.1 | 0.00236 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 21 | 21 | AY.98.1 | 0.001017 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 21 | 21 | P.1.12 | 0.010165 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 20 | 20 | AY.62 | 0.008715 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 19 | 19 | B.1.36.29 | 0.009829 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 16 | 16 | B | 0.002045 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 16 | 16 | Q.1 | 0.002021 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 14 | 14 | B.1.177.73 | 0.007928 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 14 | 14 | B.1.400 | 0.006006 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 12 | 12 | B.1.1.284 | 0.001289 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 12 | 12 | B.1.340 | 0.051502 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 12 | 12 | B.1.561 | 0.004764 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 12 | 12 | P.2 | 0.00224 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 11 | 11 | B.1.1.153 | 0.012048 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 11 | 11 | B.1.160.7 | 0.022869 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 10 | 10 | AY.66 | 0.010695 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 10 | 10 | B.1.177.86 | 0.001835 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 9 | 9 | AY.34.1 | 0.004589 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 9 | 9 | B.1.177.12 | 0.001365 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 8 | 8 | AY.5.4 | 0.002214 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 7 | 7 | B.1.396 | 0.00494 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 7 | 7 | B.1.509 | 0.006061 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | B.1.1.181 | 0.027273 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | B.1.1.433 | 0.008547 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 5 | 5 | AY.11 | 0.006693 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.1.218 | 0.030769 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.232 | 0.002149 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.258.4 | 0.013793 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.36.12 | 0.038462 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.411 | 0.014815 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | C.1 | 0.009569 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.1.219 | 0.015 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.436 | 0.003086 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | B.1.9 | 0.018519 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | C.30 | 0.005181 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.384 | 0.047619 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.57 | 0.022989 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.366 | 0.009756 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.400.1 | 0.030303 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.610 | 0.007092 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | C.2.1 | 0.013333 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.444 | 0.015873 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.500 | 0.052632 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.4.8 | 0.071429 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp13 | 581 | L581F | Ctt | Ttt | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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