CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : Mut = L130L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13130L130LL5454LsynctCctT121611850.97450716624-16626
ORF1ab/nsp13130L130LL5454LsynctCctA1216260.021381616624-16626
ORF1ab/nsp13130L130LL5454LsynctCctG121650.0041118416624-16626

Details of the mutation L130L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13130L130LctCctT11851216All0.000227
ORF1ab/nsp13130L130LctCctA261216All0.000005
ORF1ab/nsp13130L130LctCctG51216All0.000001
ORF1ab/nsp13130L130LctCctT354354B.1.1.3060.155195
ORF1ab/nsp13130L130LctCctT265268B.1.1.70.000237
ORF1ab/nsp13130L130LctCctA3268B.1.1.70.000003
ORF1ab/nsp13130L130LctCctT6767AY.470.002084
ORF1ab/nsp13130L130LctCctT3942AY.1030.000242
ORF1ab/nsp13130L130LctCctA342AY.1030.000019
ORF1ab/nsp13130L130LctCctT3737B.1.20.000326
ORF1ab/nsp13130L130LctCctT2626B.1.5480.928571
ORF1ab/nsp13130L130LctCctT2022AY.40.000031
ORF1ab/nsp13130L130LctCctG122AY.40.000002
ORF1ab/nsp13130L130LctCctA122AY.40.000002
ORF1ab/nsp13130L130LctCctT2222P.1.140.001052
ORF1ab/nsp13130L130LctCctT2020AY.50.000413
ORF1ab/nsp13130L130LctCctT1818B.1.1.5190.000715
ORF1ab/nsp13130L130LctCctT1416AY.390.000346
ORF1ab/nsp13130L130LctCctA216AY.390.000049
ORF1ab/nsp13130L130LctCctT1416AY.430.000062
ORF1ab/nsp13130L130LctCctA216AY.430.000009
ORF1ab/nsp13130L130LctCctT1616P.10.000252
ORF1ab/nsp13130L130LctCctT1115B.10.000101
ORF1ab/nsp13130L130LctCctA415B.10.000037
ORF1ab/nsp13130L130LctCctT1515D.20.001126
ORF1ab/nsp13130L130LctCctT1414B.1.617.20.000053
ORF1ab/nsp13130L130LctCctT1313B.1.4290.000306
ORF1ab/nsp13130L130LctCctT1212AY.250.000072
ORF1ab/nsp13130L130LctCctT1111AY.440.000067
ORF1ab/nsp13130L130LctCctT1010B.1.360.001459
ORF1ab/nsp13130L130LctCctT89B.1.3510.000238
ORF1ab/nsp13130L130LctCctA19B.1.3510.00003
ORF1ab/nsp13130L130LctCctT78AY.30.00007
ORF1ab/nsp13130L130LctCctA18AY.30.00001
ORF1ab/nsp13130L130LctCctT88AY.880.007073
ORF1ab/nsp13130L130LctCctT88B.1.1.3400.363636
ORF1ab/nsp13130L130LctCctT88B.1.6320.053691
ORF1ab/nsp13130L130LctCctT77AY.3.10.000597
ORF1ab/nsp13130L130LctCctT77AY.4.20.000152
ORF1ab/nsp13130L130LctCctT77B.1.3110.001922
ORF1ab/nsp13130L130LctCctT77N.90.041667
ORF1ab/nsp13130L130LctCctT66B.1.10.000109
ORF1ab/nsp13130L130LctCctT55AY.1110.000916
ORF1ab/nsp13130L130LctCctT55AY.230.000349
ORF1ab/nsp13130L130LctCctT55AY.290.000079
ORF1ab/nsp13130L130LctCctT55B.1.1.1760.002197
ORF1ab/nsp13130L130LctCctT44AY.1190.000141
ORF1ab/nsp13130L130LctCctT44AY.4.50.00043
ORF1ab/nsp13130L130LctCctT44B.1.1.1700.004988
ORF1ab/nsp13130L130LctCctT44B.1.4270.000202
ORF1ab/nsp13130L130LctCctT34P.1.170.000485
ORF1ab/nsp13130L130LctCctA14P.1.170.000162
ORF1ab/nsp13130L130LctCctT33AY.1000.000138
ORF1ab/nsp13130L130LctCctT33AY.1020.00008
ORF1ab/nsp13130L130LctCctT33AY.240.001293
ORF1ab/nsp13130L130LctCctT33AY.330.0002
ORF1ab/nsp13130L130LctCctT33AY.780.004622
ORF1ab/nsp13130L130LctCctT33B.1.2430.000209
ORF1ab/nsp13130L130LctCctG33B.1.6190.002613
ORF1ab/nsp13130L130LctCctT22A.2.50.000998
ORF1ab/nsp13130L130LctCctT22AY.200.000078
ORF1ab/nsp13130L130LctCctT22AY.9.20.000073
ORF1ab/nsp13130L130LctCctT22B.1.1770.000026
ORF1ab/nsp13130L130LctCctT22B.1.177.40.000422
ORF1ab/nsp13130L130LctCctT22B.1.2340.000264
ORF1ab/nsp13130L130LctCctA11A0.000387
ORF1ab/nsp13130L130LctCctT11A.2.40.003367
ORF1ab/nsp13130L130LctCctT11AE.20.058824
ORF1ab/nsp13130L130LctCctT11AY.1130.000142
ORF1ab/nsp13130L130LctCctT11AY.1170.000085
ORF1ab/nsp13130L130LctCctT11AY.1180.000063
ORF1ab/nsp13130L130LctCctT11AY.120.10.000321
ORF1ab/nsp13130L130LctCctT11AY.270.000065
ORF1ab/nsp13130L130LctCctT11AY.320.000532
ORF1ab/nsp13130L130LctCctT11AY.39.10.00004
ORF1ab/nsp13130L130LctCctT11AY.420.00004
ORF1ab/nsp13130L130LctCctT11AY.450.000122
ORF1ab/nsp13130L130LctCctA11AY.520.000814
ORF1ab/nsp13130L130LctCctT11AY.580.000907
ORF1ab/nsp13130L130LctCctT11AY.620.000436
ORF1ab/nsp13130L130LctCctT11AY.99.20.000092
ORF1ab/nsp13130L130LctCctA11B0.000128
ORF1ab/nsp13130L130LctCctT11B.1.1.2100.005714
ORF1ab/nsp13130L130LctCctT11B.1.1.2220.000204
ORF1ab/nsp13130L130LctCctT11B.1.1.2410.00207
ORF1ab/nsp13130L130LctCctT11B.1.1.2730.006757
ORF1ab/nsp13130L130LctCctT11B.1.1.3260.001761
ORF1ab/nsp13130L130LctCctT11B.1.1.330.000421
ORF1ab/nsp13130L130LctCctT11B.1.1.3770.001381
ORF1ab/nsp13130L130LctCctG11B.1.160.120.00641
ORF1ab/nsp13130L130LctCctT11B.1.177.860.000183
ORF1ab/nsp13130L130LctCctT11B.1.2580.000067
ORF1ab/nsp13130L130LctCctA11B.1.3010.005917
ORF1ab/nsp13130L130LctCctT11B.1.3240.001605
ORF1ab/nsp13130L130LctCctT11B.1.3360.002439
ORF1ab/nsp13130L130LctCctT11B.1.351.50.0006
ORF1ab/nsp13130L130LctCctA11B.1.36.80.001
ORF1ab/nsp13130L130LctCctT11B.1.4040.001302
ORF1ab/nsp13130L130LctCctT11B.1.4340.052632
ORF1ab/nsp13130L130LctCctT11B.1.438.10.000107
ORF1ab/nsp13130L130LctCctT11B.1.466.20.000391
ORF1ab/nsp13130L130LctCctT11B.1.4680.005714
ORF1ab/nsp13130L130LctCctT11B.1.5030.002488
ORF1ab/nsp13130L130LctCctT11B.1.5090.000866
ORF1ab/nsp13130L130LctCctT11B.1.5250.000113
ORF1ab/nsp13130L130LctCctT11B.1.5600.00463
ORF1ab/nsp13130L130LctCctT11B.1.5940.03125
ORF1ab/nsp13130L130LctCctT11B.1.5950.000261
ORF1ab/nsp13130L130LctCctT11B.1.6180.004032
ORF1ab/nsp13130L130LctCctT11B.1.6210.000089
ORF1ab/nsp13130L130LctCctA11B.1.6230.000536
ORF1ab/nsp13130L130LctCctT11B.1.6280.000352
ORF1ab/nsp13130L130LctCctT11B.1.6340.003425
ORF1ab/nsp13130L130LctCctA11B.1.6370.000073
ORF1ab/nsp13130L130LctCctT11B.4.50.011905
ORF1ab/nsp13130L130LctCctT11C.160.00106
ORF1ab/nsp13130L130LctCctT11C.36.30.000567
ORF1ab/nsp13130L130LctCctA11C.370.000116
ORF1ab/nsp13130L130LctCctT11P.1.150.000232