CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 218 | K218R | K5542R | nonsyn | aAa | aGa | 37911 | 37909 | 0.999947 | 16888-16890 |
ORF1ab/nsp13 | 218 | K218R | K5542R | nonsyn | aAA | aGG | 37911 | 2 | 0.0000527551 | 16888-16890 |
Details of the mutation K218R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 37909 | 37911 | All | 0.007251 |
ORF1ab/nsp13 | 218 | K218R | aAA | aGG | 2 | 37911 | All | 0 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 29734 | 29735 | B.1.160 | 0.927333 |
ORF1ab/nsp13 | 218 | K218R | aAA | aGG | 1 | 29735 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1060 | 1060 | B.1.160.16 | 0.98513 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 776 | 776 | B.1.160.8 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 588 | 588 | B.1.160.17 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 503 | 503 | AY.4 | 0.000783 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 481 | 481 | B.1.160.7 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 471 | 471 | B.1.160.14 | 0.997881 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 409 | 409 | B.1.160.26 | 0.990315 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 340 | 340 | B.1.160.28 | 0.994152 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 237 | 237 | B.1.160.29 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 226 | 226 | B.1.160.33 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 224 | 224 | B.1.160.24 | 0.99115 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 207 | 207 | B.1.160.23 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 205 | 205 | B.1.160.30 | 0.610119 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 202 | 202 | B.1.160.15 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 189 | 189 | B.1.160.32 | 0.811159 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 185 | 185 | B.1 | 0.001695 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 175 | 175 | B.1.160.11 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 156 | 156 | B.1.160.12 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 148 | 149 | B.1.160.22 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAA | aGG | 1 | 149 | B.1.160.22 | 0.006757 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 139 | 139 | B.1.160.9 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 137 | 137 | B.1.160.18 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 122 | 122 | AB.1 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 122 | 122 | B.1.160.31 | 0.983871 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 118 | 118 | B.1.160.10 | 0.951613 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 90 | 90 | B.1.160.25 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 82 | 82 | B.1.160.20 | 0.732143 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 66 | 66 | B.1.160.27 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 63 | 63 | B.1.177 | 0.00083 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 52 | 52 | B.1.221 | 0.003694 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 49 | 49 | B.1.160.21 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 40 | 40 | B.1.1 | 0.000726 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 36 | 36 | B.1.160.13 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 32 | 32 | B.1.177.44 | 0.016606 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 28 | 28 | B.1.160.19 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 27 | 27 | B.1.1.445 | 1 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 25 | 25 | B.1.258.11 | 0.009909 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 22 | 22 | B.1.1.39 | 0.011213 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 12 | 12 | B.1.177.43 | 0.017725 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 10 | 10 | B.1.177.73 | 0.005663 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 6 | 6 | B.1.509 | 0.005195 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 5 | 5 | B | 0.000639 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 4 | 4 | B.1.177.31 | 0.045977 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 4 | 4 | B.1.177.75 | 0.004162 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 4 | 4 | B.1.473 | 0.076923 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 3 | 3 | B.1.533 | 0.028846 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp13 | 218 | K218R | aAa | aGa | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|