CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 258 | I258I | I5582I | syn | atC | atT | 9969 | 9786 | 0.981643 | 17008-17010 |
ORF1ab/nsp13 | 258 | I258I | I5582I | syn | atC | atA | 9969 | 183 | 0.0183569 | 17008-17010 |
Details of the mutation I258I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 9786 | 9969 | All | 0.001872 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 183 | 9969 | All | 0.000035 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2433 | 2440 | AY.25 | 0.014634 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 7 | 2440 | AY.25 | 0.000042 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1199 | 1210 | AY.4 | 0.001866 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 11 | 1210 | AY.4 | 0.000017 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 962 | 962 | B.1.214.2 | 0.576739 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 851 | 888 | B.1.1.7 | 0.000762 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 37 | 888 | B.1.1.7 | 0.000033 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 336 | 336 | AY.75 | 0.018824 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 309 | 311 | B.1.617.2 | 0.001164 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 2 | 311 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 222 | 257 | B.1.2 | 0.001955 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 35 | 257 | B.1.2 | 0.000308 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 253 | 255 | AY.102 | 0.006708 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 2 | 255 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 245 | 245 | AY.91.1 | 0.995935 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 236 | 236 | C.36.1 | 0.979253 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 122 | 126 | AY.103 | 0.000758 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 4 | 126 | AY.103 | 0.000025 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 116 | 125 | AY.44 | 0.000706 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 9 | 125 | AY.44 | 0.000055 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 113 | 123 | AY.43 | 0.000501 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 10 | 123 | AY.43 | 0.000044 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 111 | 112 | B.1.429 | 0.002612 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 112 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 108 | 111 | B.1 | 0.000989 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 3 | 111 | B.1 | 0.000027 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 110 | 110 | B.1.214.4 | 1 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 103 | 107 | AY.4.2 | 0.002234 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 4 | 107 | AY.4.2 | 0.000087 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 102 | 102 | A.1 | 0.028749 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 102 | 102 | B.1.177.82 | 0.048687 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 91 | 91 | AY.27 | 0.00589 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 76 | 76 | P.1 | 0.001197 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 60 | 60 | B.1.427 | 0.00303 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 59 | 59 | AY.119 | 0.002083 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 56 | 57 | AY.39 | 0.001384 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 57 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 52 | 52 | B.1.291 | 1 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 51 | 51 | AY.99.2 | 0.0047 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 50 | 50 | AY.74 | 0.005782 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 45 | 46 | B.1.1 | 0.000816 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 46 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 45 | 45 | B.1.36.1 | 0.051311 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 42 | 42 | B.1.1.384 | 1 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 35 | 36 | AY.26 | 0.000991 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 36 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 36 | 36 | AY.4.2.1 | 0.005364 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 34 | 35 | B.1.177 | 0.000448 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 35 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 35 | 35 | B.40 | 0.01275 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 34 | 34 | B.1.189 | 0.145923 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 28 | 28 | AY.33 | 0.00187 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 27 | 27 | A.2.5 | 0.013473 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 24 | 24 | AY.46.6 | 0.001733 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 22 | 22 | AY.121 | 0.002977 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 22 | 22 | B.1.1.356 | 0.188034 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 21 | 21 | AY.2 | 0.007479 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 21 | 21 | B.1.402 | 0.205882 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 20 | 20 | AY.118 | 0.001253 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 20 | 20 | AY.39.1 | 0.000792 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 20 | 20 | P.1.10 | 0.005389 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 19 | 19 | B.1.160 | 0.000593 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 18 | 18 | B.1.243 | 0.001253 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 16 | 17 | AY.45 | 0.001947 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 17 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 15 | 15 | B.1.214.3 | 0.107143 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 15 | 15 | B.1.258.17 | 0.00156 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 14 | 14 | AY.110 | 0.001578 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 14 | 14 | B.1.239 | 0.017094 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 14 | 14 | B.1.621 | 0.001239 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 13 | 13 | B.1.1.198 | 0.01909 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 13 | 13 | B.1.177.7 | 0.002143 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 10 | 11 | AY.47 | 0.000311 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 11 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 9 | 10 | B.1.526 | 0.000212 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 10 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 9 | B | 0.001022 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 9 | B | 0.000128 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 9 | 9 | C.36 | 0.008197 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | AY.14 | 0.000704 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | AY.70 | 0.001668 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 8 | 8 | Q.4 | 0.003638 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 7 | 7 | B.1.177.14 | 0.042683 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.21 | 0.009488 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.46.1 | 0.005133 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.78 | 0.007704 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | B.1.1.174 | 0.016892 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | B.1.1.75 | 0.053191 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | B.1.177.23 | 0.016181 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | B.1.625 | 0.011765 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 4 | AY.91 | 0.002191 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 4 | AY.91 | 0.00073 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | AU.2 | 0.007264 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 3 | AY.111 | 0.000366 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 3 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.1.389 | 0.018182 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.1.186 | 0.006873 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.1.371 | 0.020833 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.221.1 | 0.005814 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.221.3 | 0.001667 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.484 | 0.1 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp13 | 258 | I258I | atC | atA | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.49 | 0.05 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 258 | I258I | atC | atT | 1 | 1 | P.1.2 | 0.001156 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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